Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0744.Seq
         (748 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5B471 Cluster: Putative uncharacterized protein; n=1; ...    36   1.1  
UniRef50_Q3IK83 Cluster: Putative protease; n=1; Pseudoalteromon...    35   1.8  
UniRef50_A6LJF6 Cluster: Putative RNA methylase; n=1; Thermosiph...    33   7.5  

>UniRef50_A5B471 Cluster: Putative uncharacterized protein; n=1; Vitis
            vinifera|Rep: Putative uncharacterized protein - Vitis
            vinifera (Grape)
          Length = 1416

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 150  DWLFLCVCSAKYCIYIEKPPFQISILFNEKSTDQIDH 40
            DW++ C  +AK+ + I   P   +I+F E S DQ+ H
Sbjct: 1048 DWMWWCFSTAKFSVLINGAPADDTIIFCEASKDQLTH 1084


>UniRef50_Q3IK83 Cluster: Putative protease; n=1; Pseudoalteromonas
           haloplanktis TAC125|Rep: Putative protease -
           Pseudoalteromonas haloplanktis (strain TAC 125)
          Length = 1080

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 389 SKFNRDGTNKYRWTPMSL-YCFVKHNENRFS 478
           +K+N DG   Y W+P S    FVK+NENR++
Sbjct: 445 AKYNEDGLTSYIWSPNSEDIVFVKNNENRYA 475


>UniRef50_A6LJF6 Cluster: Putative RNA methylase; n=1; Thermosipho
           melanesiensis BI429|Rep: Putative RNA methylase -
           Thermosipho melanesiensis BI429
          Length = 340

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 561 VNGLFYLKSFFK*YNYNIVYLMTNLAPGENL-FSLCFTKQYKDMGVHRYLFVPSLLNFE 388
           + GL + K  F  YN N V+++TN   GE L +++ F+K  K+    ++  +    NFE
Sbjct: 256 IKGLIFEKRLFGTYNMNNVWIVTNPPYGERLSYNIDFSKFLKNFEDSKFYILFPNRNFE 314


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,611,810
Number of Sequences: 1657284
Number of extensions: 11552481
Number of successful extensions: 22190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22188
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)