Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0744.Seq
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.64 
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    23   2.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.5  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    22   4.5  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   7.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 180 FTHFLLPLNDDWLFLCVCSAKY 115
           F  FL+P   D   +C C AKY
Sbjct: 762 FHPFLIPTGFDSCTVCTCDAKY 783


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 423 RYLFVPSLLNFEYF 382
           RY+FV S L F+YF
Sbjct: 139 RYVFVTSYLLFDYF 152


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = +2

Query: 83  IWKGGFSM*MQYLAEHTHKNSQSSFNGNKKCVNIVITSIQSSMSP 217
           +W+GG S  +  L  H  + +  +  G  K     +   Q+ +SP
Sbjct: 223 VWQGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTGLSP 267


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 155 TTTGYFCVYVQLNIA 111
           TTT YF + +Q N++
Sbjct: 296 TTTSYFIIMIQFNMS 310


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 7   LNVLTLFLYLSMIYLVC*LFVKQYRYL 87
           + + + FLY  MIYL+      +YR +
Sbjct: 134 IEIYSQFLYGFMIYLILDTIKSKYRQM 160


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,116
Number of Sequences: 336
Number of extensions: 3409
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)