Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0744.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    28   1.6  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   3.8  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    26   6.6  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.6  

>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 105 IEKPPFQISILFNEKSTDQIDHR 37
           IEKP    ++L N++S D ++HR
Sbjct: 189 IEKPNMHQNVLHNDRSADNLNHR 211


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 390 QSLIGTVRINIDGRPCL 440
           QS+ GT+ +N D RPCL
Sbjct: 880 QSVRGTISVNCDYRPCL 896


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 136 VCMFS*ILHLHRKTTLPNIDIV*RKVNR 53
           +C+    L LH++ T PN+DI   ++NR
Sbjct: 295 MCLMVKDLDLHKEATNPNVDIEVDELNR 322


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 655 KKYYKXRNKSLKNLPFYIITKIKFKNSNASNSQR 554
           K +Y    +    LPF I++ +   N NA  S R
Sbjct: 315 KGFYTKDGEGTAGLPFDIVSNLDIPNENAHESSR 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,663
Number of Sequences: 5004
Number of extensions: 54790
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)