Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0744.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02050.1 68417.m00275 sugar transporter, putative similar to ...    28   5.7  
At2g35190.1 68415.m04316 novel plant SNARE 11 (NPSN11) contains ...    28   5.7  
At5g45510.1 68418.m05590 leucine-rich repeat family protein cont...    28   7.6  
At1g75470.1 68414.m08766 purine permease-related contains Pfam p...    28   7.6  
At5g09890.1 68418.m01143 protein kinase, putative contains prote...    27   10.0 

>At4g02050.1 68417.m00275 sugar transporter, putative similar to
           SP|Q10710 Sugar carrier protein A {Ricinus communis},
           glucose transporter [Saccharum hybrid cultivar H65-7052]
           GI:347855; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 513

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 201 WILVMTIFTHFLLP 160
           W+ VMTIF +FLLP
Sbjct: 461 WVTVMTIFVYFLLP 474


>At2g35190.1 68415.m04316 novel plant SNARE 11 (NPSN11) contains 1
           transmembrane domain; identical to Novel plant SNARE 11
           (AtNPSN11) (Swiss-Prot:Q944A9) [Arabidopsis thaliana]
          Length = 265

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 637 RNKSLKNLPFYIITKIKFKNSNASNSQRIVLFE 539
           R   +K L  Y+  K K+ ++ ASN++R+ LF+
Sbjct: 85  RQSMVKELNSYVALKKKYSSNLASNNKRVDLFD 117


>At5g45510.1 68418.m05590 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 1222

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = -1

Query: 637 RNKSLKNLPFYIITKIKFKNSNASNSQRIVLFE 539
           +NKS KN  FY++TK++  + + S  +R+ +F+
Sbjct: 772 KNKS-KNKNFYLLTKLQHLDFSGSQIERLPIFQ 803


>At1g75470.1 68414.m08766 purine permease-related contains Pfam
           profile PF03151: Domain of unknown function, DUF250; low
           similarity to purine permease [Arabidopsis thaliana]
           GI:7620007
          Length = 381

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 546 YLKSFFK*YNYNIVYLMTNLA-PGENLFSLCFTKQYKDMGVHRYLFVPSLL 397
           + ++FF      I Y +  L    + LF+L F+K Y D+  +R+ F+  +L
Sbjct: 128 FCQAFFSDVRNQIPYRVFTLTYTTQLLFTLIFSKYYNDIKFNRWTFISLIL 178


>At5g09890.1 68418.m01143 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 515

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -2

Query: 573 MLAIVNGLFYLKSFFK*YNYNIVYLMTNLAPGENLFSLCFTKQYKDMGVHRYLFVPSLL 397
           +LA V+  + +K F+   +   +YL+    PG ++ +L   +      V R+    S+L
Sbjct: 153 LLAEVDSRYIVKLFYSFQDSECLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESIL 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,086,202
Number of Sequences: 28952
Number of extensions: 252863
Number of successful extensions: 434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)