Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0743.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   1.2  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    28   1.6  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    27   2.1  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.8  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    27   3.8  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   5.0  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   5.0  
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    26   5.0  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    26   5.0  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.6  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    26   6.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.6  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.7  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   8.7  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = -2

Query: 492 PVTKALPYSHPQP-------IRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 334
           PV    P  H  P       +  AP  PAAP+ P+A P   Q     ++P A+ V +  P
Sbjct: 521 PVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEA-PSVPQRPAVPVVPEALSVPQ--P 577

Query: 333 PLRLVFPGV 307
           P+  V P V
Sbjct: 578 PVAPVAPEV 586


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 513 WKEGNQDPVTKALPYSHPQPIRRAPTVPAAPIPP 412
           W+E  QD +  A P   P   R A +VP  P PP
Sbjct: 149 WRE-TQDKMASATPIYKPNQRRIAASVPDKPPPP 181


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 507 EGNQDPVTKALPYSHPQPIRRAPTVPAAP 421
           EG+ D V K LP     P  +AP  P AP
Sbjct: 368 EGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 471 YSHPQPIRRAPTVPAAPIPPQARPGQA 391
           +S+P  ++R P +PA P+ P  RP  A
Sbjct: 220 FSYPYELQRKPLIPAHPV-PSFRPTSA 245


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 644 YSSSSHDGKRNIHRRVPAQVXELLPAQ 564
           + SSS D K N     P+QV  L+P Q
Sbjct: 620 WESSSRDDKTNTSSTQPSQVDSLVPTQ 646


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 207 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 106
           +RC      T SIPC++        + ND+N NF
Sbjct: 85  FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 519 RNRLQMTRRRFWRLTLSWKKLLHLCWNPSVDVTLSIMATGTISFKCXSSGRGGFFWGAL 695
           RNR  +    F R  L +   +   + PS+D  +++M     S+ C    R  F W  +
Sbjct: 278 RNRYSLAHEFFLRAQLCFDISVS-GFTPSLDSVVAVMLMAQYSYFCDRLERTNFAWNCI 335


>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 440 RQCQQHRFHLKHVRGKHNHFRQFFYLGRFKYI 345
           ++ Q   FH+ + +GKH   R ++  GR K I
Sbjct: 53  KESQDVEFHVTNRQGKHPLIRAYYNTGREKVI 84


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/71 (21%), Positives = 31/71 (43%)
 Frame = -3

Query: 620 KRNIHRRVPAQVXELLPAQRQPPKATPRHLKTVSGGGKKEIRIRSQKRYRTVIHNR*DEH 441
           KRN+ RR PA++ E       PP   P  L      G+  ++   ++R +        + 
Sbjct: 242 KRNVARRKPAKIRETKEYTPFPPAQPPSKLDLEIESGEYFLKKEEKERKKRAEKKEQQKE 301

Query: 440 RQCQQHRFHLK 408
           ++ ++ +  +K
Sbjct: 302 KKKEKEKERMK 312


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 459 QPIRRAPTVPAAPIPPQARPGQ 394
           +P+ R P +P  P+P +  PG+
Sbjct: 101 EPLPREPPLPNEPVPEEPLPGE 122


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 319 VSRSHHSGVNRLLHKPGQGKICFASKTYSIFL 224
           V + H  G+N L   PG   I  ASK   I L
Sbjct: 333 VLKYHSDGINSLAFHPGSNVIALASKDTRISL 364


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -2

Query: 492 PVTKALPY-SHPQPI-RRAPTVPA-APIPPQARPGQAQPLQAVLL-PRAVQVHRTLPPL 328
           P T A P  S P P    AP +P+ AP  P + P  AQP   V   P A  +   +PP+
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 492 PVTKALPYSHPQPIRRAPTVPAAPIPPQA-RPGQAQPLQAV 373
           P+   LP   P      P  PAAP PP A  P  A P+ ++
Sbjct: 454 PIAPPLPAGMPAA---PPLPPAAPAPPPAPAPAPAAPVASI 491



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 462 PQPIRRAPTVPAAPIPPQARPGQAQP 385
           P P+  +  V   P PP A PG++ P
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAP 401


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 632 YWNYILQVLXQRTWWILLG 688
           YW ++  +   +TWW+LLG
Sbjct: 38  YW-WLCSIALIQTWWVLLG 55


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/59 (20%), Positives = 30/59 (50%)
 Frame = -3

Query: 692 STPEESTTSAGXALEGYSSSSHDGKRNIHRRVPAQVXELLPAQRQPPKATPRHLKTVSG 516
           S P++S++++    E  ++      +   R +P++  +  PA+ +    TPR++  + G
Sbjct: 478 SPPKDSSSTSTQPTEQSNAQQAPSPKEEERPLPSEPSQNQPAEYRDTPDTPRNIMPLPG 536


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -3

Query: 383 FRQFFYLGRFKYIGRFLHFV*CFQESSFRREQTFTQAWSRKNMLCFENIFDIPYHLRKNI 204
           F +FF    F Y+  + HFV   +  +F  ++     +   N LC E     P+H  +N+
Sbjct: 280 FVEFFRF--FGYLFDYEHFVLSIRHGTFLSKRAKGWQFQLNNFLCVEE----PFHTSRNL 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,938
Number of Sequences: 5004
Number of extensions: 57742
Number of successful extensions: 184
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)