Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0743.Seq
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5) 33 0.25
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.75
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 31 1.3
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_34828| Best HMM Match : W2 (HMM E-Value=6.9) 31 1.3
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.0
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8) 29 3.0
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 29 3.0
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 29 5.3
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 29 5.3
SB_4272| Best HMM Match : RVT_1 (HMM E-Value=2e-28) 29 5.3
SB_2104| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 7.0
SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8) 28 7.0
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 28 7.0
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5)
Length = 130
Score = 33.1 bits (72), Expect = 0.25
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Frame = -2
Query: 492 PVTKALPY-----SHPQPIRR----APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRT 340
P+T+ L Y HP P+RR P+ A+ IPP RP ++P++ P + H +
Sbjct: 13 PITRPLTYRPMRGEHP-PVRRDHDSLPSENASTIPPITRPLTSRPIRG-QHPPVRRAHDS 70
Query: 339 LPPLRLVFP 313
LP RL +P
Sbjct: 71 LPSERLDYP 79
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 432 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 304
PA P +RP A P LP+ V R LP L VFPG++
Sbjct: 313 PATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -2
Query: 492 PVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 331
P T +P + P +P +P AP+ P P P +A+ P LPP
Sbjct: 203 PPTPPMPETPLPP--GSPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 492 PVTKALPYSHPQPIRRAPTVPAAPIP-PQARPGQ 394
P K +PY P P+R+ P + P P +RPGQ
Sbjct: 484 PQIKPMPYPVPVPVRQPPMIQRFYYPVPVSRPGQ 517
>SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)
Length = 184
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Frame = -2
Query: 501 NQDPVTKALPYSHPQP------IRRAPTVPAAPIPPQARP 400
N DP P+S P+P IRR P P PPQ+ P
Sbjct: 109 NNDPTLPTPPFSTPRPRPKAKRIRRLLPTPPPPTPPQSTP 148
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -2
Query: 300 QA*TDFYTSLVKEKYALLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 157
Q+ +Y VKEK H+ + P RC I+LN WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = -2
Query: 492 PVTKALPYSHPQP-IRRAPTVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 331
P + +S P P + T+P+ P+PP+A G++QP L P+A+++ PP
Sbjct: 988 PKLRKKHHSPPSPDLVFDTTLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 477 LPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 364
L Y+ P P AP P PP+ +QP QAV P
Sbjct: 484 LIYTQPSPPASAPVTPQQYQPPRHAVPTSQPYQAVQRP 521
>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
Length = 149
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 733 YWPXGQVPVTXECKAPQKNPPRPLXQHLKDIVP 635
+WP + +T E AP+K PP P K I P
Sbjct: 85 FWPSKNIALTTENLAPKKIPPLPGNSAPKKIAP 117
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 629 GYWNYILQVLXQR-TWWILLGCFAFXGYWXL 718
GY +Y LQ+ Q TWWI G F + W L
Sbjct: 234 GYTSYKLQITPQWWTWWIWAGVFGWQLPWLL 264
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 492 PVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQP 385
P + P P P P+ P P+ P+ RP +QP
Sbjct: 45 PPLREPPTPAPTPPPALPSTPTLPLAPRPRPTASQP 80
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -2
Query: 504 GNQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQ----AQPLQ 379
G +P ++P S+P P VP P+PP A PG QP+Q
Sbjct: 33 GGFNPPPSSVPVSYPGPPPAMYAVPGMPMPP-AYPGMPTYPPQPMQ 77
>SB_4272| Best HMM Match : RVT_1 (HMM E-Value=2e-28)
Length = 876
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = -2
Query: 510 KEGNQDPVTKALPYSHPQPIRRAPTVPAA-----PIPPQARPGQAQPLQAVLLPRAVQVH 346
K+ ++ V ++LP HPQP+ + P PP+ P QP + R+ ++
Sbjct: 811 KDHAEELVRESLPMQHPQPVSVELDTGSTDENHLPTPPEVNPEVTQP--PLRTTRSGRI- 867
Query: 345 RTLPPLRL 322
T PP+RL
Sbjct: 868 -TKPPVRL 874
>SB_2104| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1219
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = -2
Query: 510 KEGNQDPVTKALPYSHPQPIRRAPTVPAA-----PIPPQARPGQAQP 385
K+ ++ V ++LP HPQP+ + P PP+ P AQP
Sbjct: 740 KDHAEELVRESLPMQHPQPVSVELDTGSTDENHLPTPPEVNPEVAQP 786
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -2
Query: 492 PVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 313
P A P +P P PP A+P A P AV PR T PP V
Sbjct: 715 PAAAAAPQGYPPSSAPTGYQARGPAPPGAKPRVAAPYGAV--PRPGAPAATAPPGAPVGR 772
Query: 312 GVI 304
G++
Sbjct: 773 GIL 775
>SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8)
Length = 562
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 197 KHRYSYGDGKEYRICFRSKAYFSLTRLV 280
+H +S GD ++ IC SKAY L R V
Sbjct: 432 EHEFSLGDAEKEFICATSKAYEELIRNV 459
>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -2
Query: 432 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVIIQA*TDFYTSLVKEKYA 253
P PIP QA PGQA P + P VQ + + P FPG + ++ T
Sbjct: 5 PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPGANVSLGSNMPTMPAGTTTV 62
Query: 252 LLRKHIRYSLP 220
++ +R +P
Sbjct: 63 NFQQQVRPQVP 73
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -2
Query: 504 GNQDPVTKALPYSHPQPIRRAPTVP----AAPIPPQARPGQAQP 385
G Q P + + P P R AP P +AP PP AR G A P
Sbjct: 284 GIQPPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPP 327
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = -2
Query: 492 PVTKALPYS-HPQPIRRAPTVP--AAPIPPQARPG--QAQPLQAVLLPRAVQVHRTLPPL 328
P KA P S P P R P+ P A PIPP +P ++P P + +PP
Sbjct: 1029 PKRKASPPSAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPP 1088
Query: 327 R 325
R
Sbjct: 1089 R 1089
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = -2
Query: 510 KEGNQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPL---QAVLLPRAVQVHRT 340
K+ N P + + P +P+VP P PP +PG A + + + V+
Sbjct: 2297 KDANSSPGSNST--RSPSTGSHSPSVPPPPPPPPEQPGDAMDIEDEEGQPSGSKILVNTP 2354
Query: 339 LPPLRLVFP 313
+ P RL P
Sbjct: 2355 IAPTRLALP 2363
>SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -2
Query: 510 KEGNQDPVTKALPYSHPQPIRRAPTVPA--APIPPQARPGQAQPLQAVLLPRAV 355
KE PVTK P+ +P++ PA A + P R A A LP AV
Sbjct: 343 KEVPARPVTKQEPFKQTKPVKEPSLAPAPTANMVPSDRDKPAGLQMADFLPAAV 396
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 474 PYSHPQPIRRAPTVPAAPIP 415
PY HP+P AP P AP P
Sbjct: 157 PYYHPKPADPAPMQPPAPPP 176
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,746,988
Number of Sequences: 59808
Number of extensions: 440329
Number of successful extensions: 2069
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2033
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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