Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0743.Seq
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 31 0.66
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 31 1.1
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 31 1.1
Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 30 1.5
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 1.5
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 30 2.0
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 30 2.0
AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical ... 29 2.6
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 3.5
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 3.5
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 4.6
U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical pr... 28 6.1
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 28 6.1
AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine r... 28 6.1
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 28 8.1
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 8.1
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 28 8.1
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 28 8.1
AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical ... 28 8.1
AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine re... 28 8.1
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 31.5 bits (68), Expect = 0.66
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 498 QDPVTKALPYSHPQPI-RRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 334
Q PV +A P+PI ++AP V AP PP+ + QAQP+Q P V + P
Sbjct: 240 QQPVVQA----PPKPIVQQAPVVQQAP-PPKQQQAQAQPVQQPPNPAPVVQQASAP 290
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = -2
Query: 498 QDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLV 319
Q PV +A P +++AP + A PP QAQ QA P A Q+ PP +V
Sbjct: 85 QKPVAQAPPAQAKPTVQQAPIL-VAQAPPNPPAPQAQQHQAPAPPAARQIPVQQPPKPVV 143
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -2
Query: 486 TKALPYSHPQP-IRRAPTVPAAPIPPQARPGQAQPLQ 379
T + + P+P +++APT AAP PP+ P QA P+Q
Sbjct: 303 TPPVQQAPPKPAVQQAPT-RAAPAPPKPAPQQAPPVQ 338
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 498 QDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQ 379
Q+P A+ + +++AP P PP+ P QA P++
Sbjct: 339 QNPPKPAVQQAQAPVVQQAPAPPVQQAPPKPTPQQAPPVR 378
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = -2
Query: 498 QDPVTKALPYSHP-----QPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 334
Q PV + P + P Q AP A PI Q +P Q Q QA + + V + P
Sbjct: 19 QVPVIQQAPPNSPAQQQQQAQAHAPPAQAKPIVQQTQPAQKQQAQAPPAAQQIPVVQQAP 78
Query: 333 P 331
P
Sbjct: 79 P 79
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -2
Query: 501 NQDPVTKALPYSHPQPIRRAPTVPAAPIPPQ--ARPGQAQPLQAVLLPRAVQVHRTLPPL 328
NQ P P + QP+ P AP+P Q A+P Q P A Q+ RT P+
Sbjct: 592 NQQPFFNQQPMFNQQPMYLQPAFNQAPLPYQYPAQPSQFNPFLASFRRFKRQIGRTPYPI 651
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
protein R08B4.1a protein.
Length = 1137
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -2
Query: 501 NQDPVTKALPYSHPQPIRRAPTVPAAPIPPQ--ARPGQAQPLQAVLLPRAVQVHRTLPPL 328
NQ P P + QP+ P AP+P Q A+P Q P A Q+ RT P+
Sbjct: 592 NQQPFFNQQPMFNQQPMYLQPAFNQAPLPYQYPAQPSQFNPFLASFRRFKRQIGRTPYPI 651
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -2
Query: 501 NQDPVTKALPYSHPQPIRRAPTVPAAPIPPQ--ARPGQAQPLQAVLLPRAVQVHRTLPPL 328
NQ P P + QP+ P AP+P Q A+P Q P A Q+ RT P+
Sbjct: 245 NQQPFFNQQPMFNQQPMYLQPAFNQAPLPYQYPAQPSQFNPFLASFRRFKRQIGRTPYPI 304
>Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical
protein C44H9.6 protein.
Length = 610
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = +1
Query: 331 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC----WHCRCS 447
W+KRP Y R R ++ K LP + + C W C C+
Sbjct: 567 WKKRPYYRRRQRKRSAQKEKSLPESFQAMGKSCAKMVWRCICN 609
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/57 (36%), Positives = 22/57 (38%)
Frame = -2
Query: 501 NQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 331
N PV P +PQ AP P AP P A P A P Q P H PP
Sbjct: 90 NAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPA-PYQQQPPPPPPPPHYPPPP 145
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 474 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPL 382
P +PQ AP P AP P A P A PL
Sbjct: 54 PAPYPQQAVPAPAPPPAPYPQHAVPAPAPPL 84
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 492 PVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 364
P ++ + P P VP +PPQ RP Q P+Q P
Sbjct: 338 PTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 380
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 492 PVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 364
P ++ + P P VP +PPQ RP Q P+Q P
Sbjct: 435 PTSQPVQVMTPPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 477
>AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical
protein H31G24.1 protein.
Length = 109
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = -2
Query: 492 PVTKALP---YSHP-QPIRRAPTVPAAPIPPQARPGQAQPLQA 376
PV+ A+P Y+ P QP ++P + A P PP P Q P QA
Sbjct: 58 PVSYAIPPPSYAQPPQPYAQSP-IAAVPPPPPPPPPQPAPAQA 99
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/52 (36%), Positives = 21/52 (40%)
Frame = -2
Query: 477 LPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 322
LPY P P +P AP PP R PL V + TLPP L
Sbjct: 735 LPYFIPPPQGYVGPLPPAPPPPTFRVAPQVPLPVVQTTQTAP-KPTLPPTTL 785
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/45 (42%), Positives = 21/45 (46%)
Frame = -2
Query: 510 KEGNQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQA 376
K + T A P S PQ +AP V AAP P QA P QA
Sbjct: 580 KMDTSEAATAARPPSTPQA-PQAPPVQAAPAPVQAPQAPQAPPQA 623
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/45 (42%), Positives = 21/45 (46%)
Frame = -2
Query: 510 KEGNQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQA 376
K + T A P S PQ +AP V AAP P QA P QA
Sbjct: 580 KMDTSEAATAARPPSTPQA-PQAPPVQAAPAPVQAPQAPQAPPQA 623
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 462 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVL-LPRAVQVHRTLPPLRLVFP 313
P+P R+ + AP+ P ARP P A L L A + + P R + P
Sbjct: 725 PKPPRKKKPIAEAPLRPPARPAPIVPTSAGLSLVLAASLPTSSTPSRFLNP 775
>U80451-2|AAB37837.1| 223|Caenorhabditis elegans Hypothetical
protein F11G11.5 protein.
Length = 223
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -2
Query: 504 GNQDPVTKALPYSHP--QPIRRAPTVPAAPIPPQARP 400
G+QDPV + LP S P + + + P+AP P+ +P
Sbjct: 3 GHQDPVKQPLPDSPPTDEGMSSSSAQPSAPSAPEQQP 39
>Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical
protein T12G3.1 protein.
Length = 693
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 501 NQDPVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 364
N P+ +A P S P P +PT+ +P A+ + P LP
Sbjct: 277 NPAPMPQAPPVSTPVPFPPSPTIGNGAVPKPAQEPRIPPSPTSALP 322
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 462 PQPIRRAPTVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPPLRL 322
P P+ RA P AP RP G A+P A L P Q R PP R+
Sbjct: 126 PMPVSRAGGPPRAPTSMGGRPMTGMARPPTAGLRPVTQQGLRA-PPSRM 173
>AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine
receptor, class h protein247 protein.
Length = 325
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 12 YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 104
++ + N ITFF PV G C+L K +R
Sbjct: 15 FLISISNVITFFEIPVCTFGAYCILFKTPER 45
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
F35A5.1 protein.
Length = 1274
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Frame = -2
Query: 513 WKEGNQDPVTKALPYSHPQP-------IRRAPTVPAAPIPPQARPGQAQP 385
WK +D A P S P+P ++AP P P P +A P A+P
Sbjct: 986 WKPPWEDDDEPAEPVSAPEPEKKTPVLAKKAPAKPRDPSPKKAAPVAAKP 1035
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -2
Query: 441 PTVP-AAPIPPQARPGQAQP 385
P++P P+PPQ PGQA P
Sbjct: 406 PSLPDMGPLPPQTAPGQAAP 425
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -2
Query: 492 PVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 313
P P P+P R P +PA+P PP RP ++P+ + L Q + L P V P
Sbjct: 86 PAKPTPPPPPPKPTIRPPPIPASP-PP--RPPASEPV-GIPLYSEKQHQQQLRPTTAVSP 141
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -2
Query: 492 PVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 313
P P P+P R P +PA+P PP RP ++P+ + L Q + L P V P
Sbjct: 308 PAKPTPPPPPPKPTIRPPPIPASP-PP--RPPASEPV-GIPLYSEKQHQQQLRPTTAVSP 363
>AF038612-3|AAB92045.2| 432|Caenorhabditis elegans Hypothetical
protein F13B6.3 protein.
Length = 432
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -2
Query: 492 PVTKALPYSHPQPIRRAPTVPAAPIPPQARPGQAQP 385
PVT + P + P+P + T P PP P P
Sbjct: 345 PVTTSSPATTPKPTAKPTTAPECTCPPTTFPTTRAP 380
>AC006680-2|AAK72302.1| 309|Caenorhabditis elegans Serpentine
receptor, class x protein9 protein.
Length = 309
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -1
Query: 265 GKICFASKTYSIFLTISVRISVFNTTKHDLEYSL*CLRF*ILLND 131
G + F+S +SIF ++S+ ISVF + S+ + F +++D
Sbjct: 8 GVVLFSSSIFSIFSSVSIFISVFKLAFISRKSSIYVIAFFNIISD 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,092,394
Number of Sequences: 27780
Number of extensions: 333274
Number of successful extensions: 1251
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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