Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0742.Seq
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0AZ15 Cluster: Putative uncharacterized protein; n=1; ...    35   1.7  
UniRef50_A5K020 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_A4VE37 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  

>UniRef50_Q0AZ15 Cluster: Putative uncharacterized protein; n=1;
           Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
           Putative uncharacterized protein - Syntrophomonas wolfei
           subsp. wolfei (strain Goettingen)
          Length = 321

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 306 KRFISFFSSYF*Q-AVSSSVLCPEPSACQKYSL*TFKLNRIKD*FKRHTRELYYVFYFLC 482
           K  +     Y  Q  V   ++ P  + C K SL TF  N ++  FK   R++  V+YF  
Sbjct: 96  KEIVQLILDYLKQHQVDRFIITPPIACCSKSSLDTFNFNLLEAGFKSINRDISSVYYFEN 155

Query: 483 RP 488
           RP
Sbjct: 156 RP 157


>UniRef50_A5K020 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 839

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 313 NLFNYYFQINYTYNH*LRSEIVTQVIKL*INFFAICTFAILIYI--HLFFSFKVL 155
           +LF YY+ +N   NH L   I  Q   + ++FF    FA LIY+  H    FK++
Sbjct: 588 SLFVYYYVLNEHINHILTESINDQEKNIILHFFYGFFFASLIYLKYHFNMEFKLI 642


>UniRef50_A4VE37 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 202

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = -2

Query: 334 YEEKKEINLFNYYFQINYTYNH*LRSEIVTQVIK---L*INFFAICTFAIL--IYIHLFF 170
           Y  KK ++ F  YF IN   N+    + V   I    L   F  IC F IL  I+I +FF
Sbjct: 36  YSLKKYLSHFLQYFNINKLINYIKIVQFVNYFILKQCLFFYFIIICIFEILIKIFIFIFF 95

Query: 169 SFKV 158
           SF +
Sbjct: 96  SFTI 99


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,431,130
Number of Sequences: 1657284
Number of extensions: 7895604
Number of successful extensions: 16701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16689
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)