Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0742.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54897| Best HMM Match : DUF161 (HMM E-Value=4.6)                    30   1.6  
SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)                  28   6.3  

>SB_54897| Best HMM Match : DUF161 (HMM E-Value=4.6)
          Length = 375

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -2

Query: 316 INLFNYYFQINYTYNH*LRSEIVTQVIKL*INFFAICTFAILIYI 182
           ++L+ YY Q ++ Y H  + +I T +I   IN   I T +I I I
Sbjct: 38  LSLYRYYQQRHHHYKHTTKIDITTTIIIKIINSIIIVTTSITITI 82


>SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)
          Length = 1155

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 379 DGSGHRTEDETAC*KYEEKKEIN 311
           D S H+  + TAC KYE+KK  N
Sbjct: 565 DDSEHKCLNVTACFKYEDKKRTN 587


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,364,525
Number of Sequences: 59808
Number of extensions: 240103
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)