Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0742.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical...    27   9.8  
AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a...    27   9.8  

>AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical
           protein K07H8.3 protein.
          Length = 182

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 391 NIHCRHLS*IESRTNSN--DIPENYIMSFIFY 480
           NI C  +  + S  N+N   +PENY M + FY
Sbjct: 2   NIRCARVDDLMSMQNANLMCLPENYQMKYYFY 33


>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 203 protein.
          Length = 1220

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 422  NQGLIQTTYQRIILCLLFFMSSEEVLNYNN 511
            N+ L+ TT    I CL+ FMS +EV  + N
Sbjct: 1117 NEALVYTTIGGAIGCLVSFMSKDEVDFFTN 1146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,843,838
Number of Sequences: 27780
Number of extensions: 201678
Number of successful extensions: 367
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)