Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0741.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0911 - 7031099-7031779,7031896-7032221,7032306-7032318,703...    32   0.50 
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78...    29   2.7  
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73...    29   2.7  
06_01_0575 + 4062084-4063135,4063518-4063620                           29   3.5  
10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989...    28   8.2  
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476     28   8.2  
01_01_0148 - 1337494-1338057                                           28   8.2  

>06_01_0911 -
           7031099-7031779,7031896-7032221,7032306-7032318,
           7032402-7032414,7032498-7032510,7032592-7032790
          Length = 414

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 234 AFSRFVEQEAIITVACWEQCRYAAGVC*VWIFTGRRAG 121
           +F RF+ Q  +  VA W+QC Y+ G    W++ G   G
Sbjct: 68  SFPRFISQTHLPGVAVWKQCDYSDG---KWVWDGDHGG 102


>12_01_0101 -
           779047-779298,779459-779711,779857-780005,780033-780281,
           780377-780571,780681-780788,780935-781156,781669-781986,
           781988-782615,783059-783135,783161-783267,783491-783619,
           783763-783820,783902-783984,784458-784539,784617-784693,
           784827-784910,784999-785068,785146-785234,785319-786008,
           786485-786797
          Length = 1410

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 190 CHCDDGFLFDKSGKCVPVDEC 252
           C C DGF  D   KC  +DEC
Sbjct: 500 CKCPDGFKGDGVHKCEDIDEC 520


>11_01_0101 -
           738305-738556,738723-738977,739306-739554,739649-739843,
           739953-740060,740184-740405,740806-741390,741495-741863,
           742423-742529,742755-742883,743027-743084,743166-743248,
           744115-744196,744274-744350,744477-744560,744649-744718,
           744796-744884,744965-745654,746127-746439
          Length = 1338

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 190 CHCDDGFLFDKSGKCVPVDEC 252
           C C DGF  D   KC  +DEC
Sbjct: 500 CKCPDGFKGDGVHKCEDIDEC 520


>06_01_0575 + 4062084-4063135,4063518-4063620
          Length = 384

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -2

Query: 205 HHHSGMLGAMPLRSWCVLGLDLHRSARRGP 116
           HHH G  G     SWC    D  R  RRGP
Sbjct: 265 HHHHGGGGGAAAESWCSSDSD-RRGWRRGP 293


>10_06_0035 -
           9896289-9896390,9897394-9897503,9897587-9897715,
           9898734-9898800,9898888-9898970,9899878-9899959,
           9900049-9900125,9900206-9900289,9900368-9900437,
           9900580-9900668,9900921-9901613,9902833-9903142
          Length = 631

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 154 THTSCVAALLPTCHCDDGFLFDKSGKCVPVDECPTKR 264
           T ++C  +    C C  GF  D   KC  ++EC  K+
Sbjct: 491 TFSACQESGNGKCQCPAGFRGDGVKKCEDINECKEKK 527


>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
          Length = 676

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 163 WCVLGLDLHRSARRGPLSNENS 98
           W VLG  LHR+ RRG  +NE +
Sbjct: 599 WKVLGGVLHRTTRRGEKNNEGA 620


>01_01_0148 - 1337494-1338057
          Length = 187

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
 Frame = +1

Query: 124 CAPTCE---DPDLTHTSCVAALLPTCHCDDGF--LFDKSGKCVPVDECPTKRVTVTTDS 285
           CAP+ E    P      C  +L P CHC D         G+C  VD    + + V  DS
Sbjct: 114 CAPSSEWPWGPCCDIAVCTKSLPPICHCSDEVESCAAACGQCEMVDSWSWRPLFVCRDS 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,340,841
Number of Sequences: 37544
Number of extensions: 485572
Number of successful extensions: 1294
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)