Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0741.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    31   0.014
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    29   0.056
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    29   0.056
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   6.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   6.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   6.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.4  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   8.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.5  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 30.7 bits (66), Expect = 0.014
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 529 FGEGTANERTV*FWFKRFRDGNFDLKNE 612
           +G+    ER    WF +FR G+F LK+E
Sbjct: 33  YGDEALKERQCQNWFDKFRSGDFSLKDE 60


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 28.7 bits (61), Expect = 0.056
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 166 CVAALLPTCHCDDGFLFDKSGKCVPVDEC 252
           C+    P C C  G+L +K   CVP  +C
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 28.7 bits (61), Expect = 0.056
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 166 CVAALLPTCHCDDGFLFDKSGKCVPVDEC 252
           C+    P C C  G+L +K   CVP  +C
Sbjct: 63  CIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 409 NNNNRGYSMKLPFYCNRYFELTKNLH 486
           N NN  Y  KL  YCN Y +L  N++
Sbjct: 90  NYNNNNYK-KL--YCNNYKKLYYNIN 112


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 409 NNNNRGYSMKLPFYCNRYFELTKNLH 486
           N NN  Y  KL  YCN Y +L  N++
Sbjct: 90  NYNNNNYK-KL--YCNNYKKLYYNIN 112


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 409 NNNNRGYSMKLPFYCNRYFELTKNLH 486
           N NN  Y  KL  YCN Y +L  N++
Sbjct: 90  NYNNNNYK-KL--YCNNYRKLYYNIN 112


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -2

Query: 541 SPLQTNYHLKKLHSKISNHEDSLSIRSTYYNKTAISYYNPCY 416
           S L  NY     ++  +N+ +  +  + Y N     YYN  Y
Sbjct: 316 SSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINY 357


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 580 FRDGNFDLKNE 612
           FRDGN D+++E
Sbjct: 47  FRDGNIDVEDE 57


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 367 PPDGKWLPSPMDFSNA 320
           PPD  W P  + F+NA
Sbjct: 104 PPDKVWKPDIVLFNNA 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,864
Number of Sequences: 438
Number of extensions: 5341
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)