Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0741.Seq
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65970.1 68418.m08305 seven transmembrane MLO family protein ... 34 0.10
At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea... 31 0.97
At2g34940.1 68415.m04289 vacuolar sorting receptor, putative sim... 31 0.97
At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea... 29 2.2
At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea... 29 2.2
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 29 3.9
At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide... 28 5.2
At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide... 28 5.2
At2g43240.1 68415.m05374 nucleotide-sugar transporter family pro... 28 6.8
At5g53030.2 68418.m06586 expressed protein 27 9.0
At5g53030.1 68418.m06587 expressed protein 27 9.0
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 27 9.0
At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein si... 27 9.0
At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein si... 27 9.0
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ... 27 9.0
At2g30290.1 68415.m03687 vacuolar sorting receptor, putative sim... 27 9.0
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 27 9.0
>At5g65970.1 68418.m08305 seven transmembrane MLO family protein /
MLO-like protein 10 (MLO10) identical to membrane
protein Mlo10 [Arabidopsis thaliana]
gi|14091590|gb|AAK53803; similar to MLO protein
SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum
vulgare][Barley]
Length = 569
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 94 PENSHLTMDPC-APTCEDPDLTHTSCVAALLPTCHCDDG 207
PE + +M PC AP+ D D TH +AA + CD+G
Sbjct: 111 PEKAAASMLPCPAPSTHDQDKTHRRRLAAATTSSRCDEG 149
>At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
(GP:1737218) [Arabidopsis thaliana]
Length = 623
Score = 30.7 bits (66), Expect = 0.97
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 154 THTSCVAALLPTCHCDDGFLFDKSGKCVPVDECPTKRV 267
T+++CV C C GF D C VDEC K V
Sbjct: 484 TYSACVDDHSKDCKCPLGFKGDGVKNCEDVDECKEKTV 521
>At2g34940.1 68415.m04289 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 618
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 151 LTHTSCVAALLPTCHCDDGFLFDKSGKCVPVDECPTK 261
LT +SC + C C GFL D KC +DEC K
Sbjct: 484 LTFSSCSDSETSGCRCPLGFLGD-GLKCEDIDECKEK 519
>At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 160 TSCVAALLPTCHCDDGFLFDKSGKCVPVDECPTKR 264
++CV C C GF D + KC ++EC K+
Sbjct: 491 SACVDKDSVKCECPPGFKGDGTKKCEDINECKEKK 525
>At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 160 TSCVAALLPTCHCDDGFLFDKSGKCVPVDECPTKR 264
++CV C C GF D + KC ++EC K+
Sbjct: 491 SACVDKDSVKCECPPGFKGDGTKKCEDINECKEKK 525
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 280 QLLQSLSWSDIHQRVRIFQICRTGSHHHSG-MLGAMPLRS 164
Q L++ +W+ + + +F I R HHH G L +PL S
Sbjct: 31 QFLEATTWN-LEDAINLFLIARRNPHHHHGEELVPLPLPS 69
>At2g14720.2 68415.m01657 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 160 TSCVAALLPTCHCDDGFLFDKSGKCVPVDECPTKR 264
++CV C C GF D KC ++EC K+
Sbjct: 491 SACVDKDSVKCECPPGFKGDGVKKCEDINECKEKK 525
>At2g14720.1 68415.m01656 vacuolar sorting receptor, putative
identical to GB:U79960 GI:1737220; contains a
calcium-binding EGF-like domain signature
Length = 628
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 160 TSCVAALLPTCHCDDGFLFDKSGKCVPVDECPTKR 264
++CV C C GF D KC ++EC K+
Sbjct: 491 SACVDKDSVKCECPPGFKGDGVKKCEDINECKEKK 525
>At2g43240.1 68415.m05374 nucleotide-sugar transporter family
protein weak similarity to SP|P78382 CMP-sialic acid
transporter {Homo sapiens}; contains Pfam profile
PF04142: Nucleotide-sugar transporter
Length = 787
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 157 HTSCVAALLPTCHCDDGFLFDKSGKCVPVDE 249
H S V A+ +C+C+D SG C ++
Sbjct: 125 HFSAVPAIFQSCYCEDAQQSKSSGDCCTTED 155
>At5g53030.2 68418.m06586 expressed protein
Length = 224
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 578 RLNQNHTVRSLAVPSPNELPFEKTSLKNLKP 486
RLNQ VRSL +P LP E T++ P
Sbjct: 67 RLNQKGVVRSLELPPRLVLPGESTTVNEPSP 97
>At5g53030.1 68418.m06587 expressed protein
Length = 245
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 578 RLNQNHTVRSLAVPSPNELPFEKTSLKNLKP 486
RLNQ VRSL +P LP E T++ P
Sbjct: 67 RLNQKGVVRSLELPPRLVLPGESTTVNEPSP 97
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = +1
Query: 70 QGSVEKDCPENSH--LTMDPCAPTC 138
QG + K+CPEN H M C C
Sbjct: 160 QGHISKNCPENKHGIYPMGGCCKVC 184
>At5g13980.2 68418.m01635 glycosyl hydrolase family 38 protein
similar to alpha-mannosidase GI:1419374 from [Homo
sapiens]
Length = 1024
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -1
Query: 314 QSQAAAYYKSESVVTVTLLVGHSSTGTHFPDLSNRKPSSQWHVGSNAATQLVCVRS 147
+S+ Y S ++V L V H +H D+ K Q++VGSN + Q+ CV++
Sbjct: 20 ESRYMVYNTSHTIVPGKLNV-HVVPHSH-DDVGWLKTVDQYYVGSNNSIQVACVQN 73
>At5g13980.1 68418.m01634 glycosyl hydrolase family 38 protein
similar to alpha-mannosidase GI:1419374 from [Homo
sapiens]
Length = 921
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -1
Query: 314 QSQAAAYYKSESVVTVTLLVGHSSTGTHFPDLSNRKPSSQWHVGSNAATQLVCVRS 147
+S+ Y S ++V L V H +H D+ K Q++VGSN + Q+ CV++
Sbjct: 20 ESRYMVYNTSHTIVPGKLNV-HVVPHSH-DDVGWLKTVDQYYVGSNNSIQVACVQN 73
>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
almost identical to ubiquitin-specific protease 22
GI:11993484 [Arabidopsis thaliana], one amino acid
difference
Length = 557
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 300 CLL*VGISCYSHSLGRTFIN-GYAFSRFVEQEAIITVACWEQ 178
CL+ ISC SH L T +N G+ + VE+ + AC +Q
Sbjct: 69 CLICRSISCSSHILLHTQLNKGHDIAIDVERSELYCCACIDQ 110
>At2g30290.1 68415.m03687 vacuolar sorting receptor, putative
similar to vacuolar sorting receptor homolog
[Arabidopsis thaliana] GI:1737218
Length = 625
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 154 THTSCVAALLPTCHCDDGFLFDKSGKCVPVDECPTK 261
T+++C C C GF+ D +C V+EC K
Sbjct: 488 TYSACRDDHSKGCKCPPGFIGDGLKECKDVNECEEK 523
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 391 LLGRRAYGPPDGK--WLPSPMDFSNARSRAKPLP 296
LL RRA G P G L PMDF ++S+ + +P
Sbjct: 222 LLFRRAQGGPGGGPGGLGGPMDFGRSKSKFQEVP 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,871,535
Number of Sequences: 28952
Number of extensions: 380216
Number of successful extensions: 1063
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -