Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0740.Seq
(527 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00005BFE3C Cluster: PREDICTED: hypothetical protein;... 71 1e-11
UniRef50_Q59FI9 Cluster: Ribosomal protein L12 variant; n=56; Fu... 71 1e-11
UniRef50_P30050 Cluster: 60S ribosomal protein L12; n=158; Eukar... 71 1e-11
UniRef50_A7TCB3 Cluster: Predicted protein; n=1; Nematostella ve... 70 4e-11
UniRef50_UPI00015533B4 Cluster: PREDICTED: similar to ribosomal ... 67 3e-10
UniRef50_Q4V5X9 Cluster: IP07888p; n=8; Eukaryota|Rep: IP07888p ... 65 8e-10
UniRef50_UPI0000D9D615 Cluster: PREDICTED: similar to 60S riboso... 64 2e-09
UniRef50_Q0CUU2 Cluster: 60S ribosomal protein L12; n=1; Aspergi... 52 8e-06
UniRef50_A0BE24 Cluster: Chromosome undetermined scaffold_101, w... 50 3e-05
UniRef50_P35025 Cluster: 50S ribosomal protein L11P; n=15; Archa... 48 2e-04
UniRef50_Q8SR84 Cluster: 60S ribosomal protein L12; n=4; Eukaryo... 46 7e-04
UniRef50_Q4Y4I9 Cluster: 60S ribosomal protein L12, putative; n=... 44 0.002
UniRef50_Q95RU8 Cluster: LD10743p; n=8; Coelomata|Rep: LD10743p ... 38 0.11
UniRef50_Q38D53 Cluster: 60S ribosomal protein L12, putative; n=... 38 0.11
UniRef50_P54030 Cluster: 50S ribosomal protein L11P; n=16; Archa... 38 0.11
UniRef50_Q01BX3 Cluster: Putative 60S ribosomal protein L12; n=1... 37 0.25
UniRef50_Q7RNM2 Cluster: Putative peptidyl prolyl cis-trans isom... 36 0.76
UniRef50_Q75DG2 Cluster: ABR064Wp; n=1; Eremothecium gossypii|Re... 35 1.0
UniRef50_Q97BN1 Cluster: 50S ribosomal protein L11P; n=4; Euryar... 35 1.0
UniRef50_Q6FMS7 Cluster: Similar to tr|Q08492 Saccharomyces cere... 34 1.8
UniRef50_UPI00015B4CB6 Cluster: PREDICTED: hypothetical protein;... 33 3.1
UniRef50_Q55FW0 Cluster: Putative uncharacterized protein; n=1; ... 33 3.1
UniRef50_A2FQB5 Cluster: Putative uncharacterized protein; n=1; ... 33 5.4
UniRef50_UPI00006CCA71 Cluster: hypothetical protein TTHERM_0028... 32 7.1
UniRef50_Q7QQ98 Cluster: GLP_243_12971_12423; n=1; Giardia lambl... 32 7.1
UniRef50_Q7SC26 Cluster: Predicted protein; n=1; Neurospora cras... 32 9.4
UniRef50_P62445 Cluster: 50S ribosomal protein L11P; n=9; Archae... 32 9.4
>UniRef50_UPI00005BFE3C Cluster: PREDICTED: hypothetical protein;
n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
Bos taurus
Length = 255
Score = 71.3 bits (167), Expect = 1e-11
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = -1
Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGAL 390
+AR LSG++KEILGTAQSVGC V+GR PHD+IDDINSGA+
Sbjct: 211 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 250
>UniRef50_Q59FI9 Cluster: Ribosomal protein L12 variant; n=56;
Fungi/Metazoa group|Rep: Ribosomal protein L12 variant -
Homo sapiens (Human)
Length = 197
Score = 71.3 bits (167), Expect = 1e-11
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = -1
Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGAL 390
+AR LSG++KEILGTAQSVGC V+GR PHD+IDDINSGA+
Sbjct: 153 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 192
>UniRef50_P30050 Cluster: 60S ribosomal protein L12; n=158;
Eukaryota|Rep: 60S ribosomal protein L12 - Homo sapiens
(Human)
Length = 165
Score = 71.3 bits (167), Expect = 1e-11
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = -1
Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGAL 390
+AR LSG++KEILGTAQSVGC V+GR PHD+IDDINSGA+
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 160
>UniRef50_A7TCB3 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 136
Score = 69.7 bits (163), Expect = 4e-11
Identities = 31/44 (70%), Positives = 37/44 (84%)
Frame = -1
Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXIXE 378
MAR+LSG+VKEILGT QSVGCTV+G PHD+ID INSG + I +
Sbjct: 91 MARHLSGTVKEILGTCQSVGCTVDGMAPHDVIDKINSGEIEIED 134
>UniRef50_UPI00015533B4 Cluster: PREDICTED: similar to ribosomal
protein L12; n=1; Mus musculus|Rep: PREDICTED: similar
to ribosomal protein L12 - Mus musculus
Length = 142
Score = 66.9 bits (156), Expect = 3e-10
Identities = 29/40 (72%), Positives = 36/40 (90%)
Frame = -1
Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGAL 390
+AR LSG++KEILGT+QSVGC V+G PHD+IDDINSGA+
Sbjct: 98 LARELSGTIKEILGTSQSVGCNVDGCHPHDIIDDINSGAV 137
>UniRef50_Q4V5X9 Cluster: IP07888p; n=8; Eukaryota|Rep: IP07888p -
Drosophila melanogaster (Fruit fly)
Length = 307
Score = 65.3 bits (152), Expect = 8e-10
Identities = 26/42 (61%), Positives = 36/42 (85%)
Frame = -1
Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXI 384
MAR L G+ KE+LGTAQSVGCTV+G+ PHD+ID++N G++ +
Sbjct: 263 MARELKGTCKEVLGTAQSVGCTVDGKHPHDVIDELNEGSIEV 304
>UniRef50_UPI0000D9D615 Cluster: PREDICTED: similar to 60S ribosomal
protein L12; n=1; Macaca mulatta|Rep: PREDICTED: similar
to 60S ribosomal protein L12 - Macaca mulatta
Length = 268
Score = 64.1 bits (149), Expect = 2e-09
Identities = 27/38 (71%), Positives = 34/38 (89%)
Frame = -1
Query: 503 RYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGAL 390
R LSG++KE+LGTAQS+GC V+GR PH +IDDINSGA+
Sbjct: 226 RELSGTIKELLGTAQSLGCNVDGRHPHKIIDDINSGAV 263
>UniRef50_Q0CUU2 Cluster: 60S ribosomal protein L12; n=1;
Aspergillus terreus NIH2624|Rep: 60S ribosomal protein
L12 - Aspergillus terreus (strain NIH 2624)
Length = 189
Score = 52.0 bits (119), Expect = 8e-06
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = -1
Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXI 384
+A+ L G+V EILGTA SVGC V+GR P D+ DD+ +G + I
Sbjct: 145 LAKELKGTVLEILGTAFSVGCQVDGRSPKDVSDDVKAGEIDI 186
>UniRef50_A0BE24 Cluster: Chromosome undetermined scaffold_101,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_101,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 164
Score = 50.4 bits (115), Expect = 3e-05
Identities = 22/46 (47%), Positives = 34/46 (73%)
Frame = -1
Query: 521 EXQIMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXI 384
E + +A+ +G+VK++LGTAQS+G TV+G+P +I INSG L +
Sbjct: 117 EEKSLAKTFTGTVKQVLGTAQSLGATVDGQPVKAIIGKINSGELKV 162
>UniRef50_P35025 Cluster: 50S ribosomal protein L11P; n=15;
Archaea|Rep: 50S ribosomal protein L11P - Sulfolobus
acidocaldarius
Length = 170
Score = 47.6 bits (108), Expect = 2e-04
Identities = 19/40 (47%), Positives = 31/40 (77%)
Frame = -1
Query: 515 QIMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSG 396
Q+ A+ L+ ++K +LGTA+S+G TVEG+ P D+I +I+ G
Sbjct: 113 QLSAKTLTAAIKSLLGTARSIGITVEGKDPKDVIKEIDQG 152
>UniRef50_Q8SR84 Cluster: 60S ribosomal protein L12; n=4;
Eukaryota|Rep: 60S ribosomal protein L12 -
Encephalitozoon cuniculi
Length = 166
Score = 45.6 bits (103), Expect = 7e-04
Identities = 17/40 (42%), Positives = 31/40 (77%)
Frame = -1
Query: 497 LSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXIXE 378
LSG+VKE+LGT +S+GC V+G+ P ++ +I++G + + +
Sbjct: 126 LSGTVKEVLGTCKSIGCKVDGKCPKEVTREIDAGEIKLPD 165
>UniRef50_Q4Y4I9 Cluster: 60S ribosomal protein L12, putative; n=9;
Eukaryota|Rep: 60S ribosomal protein L12, putative -
Plasmodium chabaudi
Length = 177
Score = 44.4 bits (100), Expect = 0.002
Identities = 18/43 (41%), Positives = 30/43 (69%)
Frame = -1
Query: 506 ARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXIXE 378
A+ G+VKEILGT S+GCTV+G+ P + + I++G + + +
Sbjct: 134 AKEFRGTVKEILGTCNSIGCTVDGKKPTTIQEMIDNGDIDVPD 176
>UniRef50_Q95RU8 Cluster: LD10743p; n=8; Coelomata|Rep: LD10743p -
Drosophila melanogaster (Fruit fly)
Length = 1637
Score = 38.3 bits (85), Expect = 0.11
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +3
Query: 138 APKKGRGKA-KVVEDPETESVEAEVDEKNIVSEKKTKRGRKLPVTQMD 278
APK+GRG+A K+ D E E+ E + ++ + EKK R RKLP +D
Sbjct: 335 APKRGRGRARKIRPDAEVETSEVILPCEDSLGEKKPGRKRKLPDEPID 382
>UniRef50_Q38D53 Cluster: 60S ribosomal protein L12, putative; n=3;
Trypanosoma|Rep: 60S ribosomal protein L12, putative -
Trypanosoma brucei
Length = 219
Score = 38.3 bits (85), Expect = 0.11
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXI 384
M + V E+LGTA S+GCT++G P + + + G L +
Sbjct: 176 MGASMKSVVMEVLGTAVSIGCTIDGEHPRAIQEKVQEGKLKV 217
>UniRef50_P54030 Cluster: 50S ribosomal protein L11P; n=16;
Archaea|Rep: 50S ribosomal protein L11P - Methanococcus
jannaschii
Length = 161
Score = 38.3 bits (85), Expect = 0.11
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = -1
Query: 497 LSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSG 396
L +VKE+LGT S+G TVEG+ P ++ +I++G
Sbjct: 119 LKNAVKEVLGTCGSMGVTVEGKDPKEVQKEIDAG 152
>UniRef50_Q01BX3 Cluster: Putative 60S ribosomal protein L12; n=1;
Ostreococcus tauri|Rep: Putative 60S ribosomal protein
L12 - Ostreococcus tauri
Length = 230
Score = 37.1 bits (82), Expect = 0.25
Identities = 16/21 (76%), Positives = 20/21 (95%)
Frame = -1
Query: 506 ARYLSGSVKEILGTAQSVGCT 444
A+ L+G+VKEILGTA+SVGCT
Sbjct: 185 AKNLAGTVKEILGTAKSVGCT 205
>UniRef50_Q7RNM2 Cluster: Putative peptidyl prolyl cis-trans
isomerase with RNA binding region; n=5; Plasmodium
(Vinckeia)|Rep: Putative peptidyl prolyl cis-trans
isomerase with RNA binding region - Plasmodium yoelii
yoelii
Length = 899
Score = 35.5 bits (78), Expect = 0.76
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 144 KKGRGKAKVVEDPETESVEAE---VDEKNIVSEKKTKRGRKLPVTQ 272
++GR AK E E E + E ++EK V EKK +RGRK VT+
Sbjct: 74 RRGRKSAKEEEKKEXEEXQEEKIEIEEKKEVEEKKGRRGRKEAVTK 119
>UniRef50_Q75DG2 Cluster: ABR064Wp; n=1; Eremothecium gossypii|Rep:
ABR064Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 1008
Score = 35.1 bits (77), Expect = 1.0
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 129 DNDAPKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTK 245
D D+ KKG K+K ++P+ + +E E D+KN K +K
Sbjct: 696 DKDSGKKGDEKSKPCDEPKVQPIEDEKDDKNSKGPKDSK 734
>UniRef50_Q97BN1 Cluster: 50S ribosomal protein L11P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L11P -
Thermoplasma volcanium
Length = 158
Score = 35.1 bits (77), Expect = 1.0
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = -1
Query: 512 IMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXIXE 378
++A+ L +V E+LGT ++G VEG+ P ++ I SG + I +
Sbjct: 114 MLAKDLKSAVLEVLGTCVAMGINVEGKDPKEVQKLIKSGQIKIEQ 158
>UniRef50_Q6FMS7 Cluster: Similar to tr|Q08492 Saccharomyces
cerevisiae YOR078w; n=1; Candida glabrata|Rep: Similar
to tr|Q08492 Saccharomyces cerevisiae YOR078w - Candida
glabrata (Yeast) (Torulopsis glabrata)
Length = 230
Score = 34.3 bits (75), Expect = 1.8
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 42 TVITKTNISS*IMAPRSXXXXXXXXXXXXDNDAPKK-GRGKAK-VVEDPETESVEAEVDE 215
T T+T + + RS D+DAP++ G G AK VED + +A + E
Sbjct: 19 TAHTETETQESVKSLRSKSVDVSDSDSDSDDDAPEEEGLGNAKDEVEDQIKKQEQAAILE 78
Query: 216 KNIVSEKKTKRGRKLPVTQMD 278
K + EK+ K +L Q++
Sbjct: 79 KQRIREKRKKENERLKEQQLE 99
>UniRef50_UPI00015B4CB6 Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 271
Score = 33.5 bits (73), Expect = 3.1
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 129 DNDAPKKGRGK-AKVVEDPETESVEAEVDEKNIVSEKKTK-RGRK 257
+ A KKGRGK AK + PE++ E +EK KK K RG K
Sbjct: 114 EKPAAKKGRGKAAKKADTPESDEAEKPAEEKTSPVAKKGKGRGAK 158
>UniRef50_Q55FW0 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1127
Score = 33.5 bits (73), Expect = 3.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 302 PLFYHSHLVHLCHRQLPSAFGFLFRYNVLFINFSFYRL 189
PLF+ L H C ++ F F + N+ F++ SF+R+
Sbjct: 372 PLFFSIPLTHFCSKKYLHFFFFFKKINIKFLSVSFFRI 409
>UniRef50_A2FQB5 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 387
Score = 32.7 bits (71), Expect = 5.4
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 144 KKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRK 257
KKG+ K +D E E+ E E +EK +K TK+ K
Sbjct: 115 KKGKNSKKSTDDEEEENEEEEDEEKTTSKKKSTKKQEK 152
>UniRef50_UPI00006CCA71 Cluster: hypothetical protein TTHERM_00283580;
n=1; Tetrahymena thermophila SB210|Rep: hypothetical
protein TTHERM_00283580 - Tetrahymena thermophila SB210
Length = 1675
Score = 32.3 bits (70), Expect = 7.1
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -1
Query: 257 LPSAFGFLFRYNVL-FINFSFYRLRFRIFNYF 165
L A L++ NV+ I F +Y++RFRI+NYF
Sbjct: 1009 LSYAGALLYKNNVVGAIKFDYYKVRFRIWNYF 1040
>UniRef50_Q7QQ98 Cluster: GLP_243_12971_12423; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_243_12971_12423 - Giardia lamblia
ATCC 50803
Length = 182
Score = 32.3 bits (70), Expect = 7.1
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Frame = -1
Query: 494 SGSVKEILGTAQSVGCTVEGR----PPHDLIDDINSGALXIXE 378
+G+V E+LG+A+SVGC VE + P ++ + + +G + I E
Sbjct: 126 AGTVLEVLGSARSVGCKVEYKGTVYSPAEITEMVKAGDIEIPE 168
>UniRef50_Q7SC26 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 856
Score = 31.9 bits (69), Expect = 9.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 141 PKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKL 260
PKKG G+ +E+ ET E D + + KK ++ R L
Sbjct: 633 PKKGEGRVVTLEEVETIVFGREKDAEKVYGRKKNRKSRAL 672
>UniRef50_P62445 Cluster: 50S ribosomal protein L11P; n=9;
Archaea|Rep: 50S ribosomal protein L11P - Methanococcus
maripaludis
Length = 159
Score = 31.9 bits (69), Expect = 9.4
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1
Query: 512 IMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSG 396
++A L + KE++GT SVG +VEG P + I++G
Sbjct: 114 MLAYNLKNASKEVVGTCVSVGISVEGMTPSEAQKAIDAG 152
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 384,867,489
Number of Sequences: 1657284
Number of extensions: 5795339
Number of successful extensions: 20485
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20458
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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