Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0740.Seq
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    57   1e-09
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    57   1e-09
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    27   1.7  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   2.3  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   4.0  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   5.3  
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe...    25   7.0  
SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    25   7.0  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 25/44 (56%), Positives = 36/44 (81%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXIXE 378
           +A+ LSG+VKEILGTA SVGCTV+G+ PHD+  +I++G + I +
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 25/44 (56%), Positives = 36/44 (81%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXIXE 378
           +A+ LSG+VKEILGTA SVGCTV+G+ PHD+  +I++G + I +
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIPQ 164


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 303 SSILPFSSCPFVSPAASFRVWFSFQIQCSF 214
           SSI  FS  P  +PA  FR+   ++  C F
Sbjct: 236 SSIATFSFSPVGTPAGDFRISVQYRKNCHF 265


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 239 NQTRKEAAGDTNGQDENGKIEETAPKKKSGRE 334
           +++++++ GDT+  D N K E TA K  S  E
Sbjct: 886 SKSKEKSGGDTSALDSNAKNEPTAAKPISKLE 917


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 236 ENQTRKEAAGDTNGQDENGKIEETAPKKKSGRE 334
           +N+   E A   + +D   KIEE A  + SG+E
Sbjct: 536 DNKEANEKAEKVDSKDVKEKIEEAADLQNSGKE 568


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 327 PLFFFGAVSSILPFSSCPFVSPAASFRVWFSFQIQCS 217
           P  F G     L F    +    A F++W +F+ +CS
Sbjct: 211 PFRFPGNEKFYLGFDDISYSKLIADFQLWMTFKAECS 247


>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 348 KAAXNSRPLFFFGAVSSILPFSSCPFVSPAA 256
           +AA +  P FFFG+ S+  P SS     PAA
Sbjct: 226 EAATSKNPKFFFGSDSAPHPRSSKLKTPPAA 256


>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 260 QLPSAFGF-LFRYNVLFINFSFY 195
           +L + FGF LF Y+  F NF FY
Sbjct: 11  ELNNYFGFYLFNYHFDFSNFGFY 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,870
Number of Sequences: 5004
Number of extensions: 25297
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)