Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0740.Seq
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                         52   2e-07
02_05_0416 + 28791512-28792012                                         52   2e-07
11_04_0079 - 13284869-13284929,13285518-13285639,13285749-132858...    31   0.76 
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232...    29   3.1  
04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424...    28   4.0  
06_03_0792 + 24658324-24658763,24659167-24659387,24659765-246598...    28   5.3  
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243...    27   7.1  
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569...    27   7.1  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/42 (54%), Positives = 32/42 (76%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXI 384
           MA+ ++G+VKEILGT  SVGCTV+G+ P DL  +I+ G + I
Sbjct: 122 MAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163


>02_05_0416 + 28791512-28792012
          Length = 166

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/42 (54%), Positives = 32/42 (76%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXI 384
           MA+ ++G+VKEILGT  SVGCTV+G+ P DL  +I+ G + I
Sbjct: 122 MAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163


>11_04_0079 -
           13284869-13284929,13285518-13285639,13285749-13285820,
           13286048-13286200,13289510-13289709,13289745-13289947,
           13289991-13290181
          Length = 333

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 391 KAPLLMSSIRSCGGLPSTVHPTDCAVPRISF 483
           +APL   S+RSCG L   + P + ++PR+ +
Sbjct: 120 QAPLSPKSVRSCGPLKLVIEPYNGSLPRLHY 150


>04_04_1441 -
           33621423-33622118,33622251-33622315,33623140-33623227,
           33623957-33625570
          Length = 820

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 144 KKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRK 257
           KK   KA +VE  ETE  +    EK +  EKK K+ +K
Sbjct: 330 KKKAKKASLVEG-ETEGAKDSKQEKKVKKEKKEKKKKK 366


>04_04_1121 -
           31041629-31041793,31041891-31042022,31042255-31042425,
           31042521-31042622,31042703-31042807,31043115-31043286,
           31043916-31043980,31044179-31044502,31044729-31044846,
           31044928-31045011,31045472-31045603,31045714-31046570,
           31046735-31046849,31047371-31047481,31047763-31047824
          Length = 904

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 153 RGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKLPVTQMD 278
           R KAK+  +    +++A   +  +VSEK  K  + +PV++ D
Sbjct: 170 RSKAKMWANDTMGTLDASAKDSMVVSEKPEKPQKNVPVSEND 211


>06_03_0792 +
           24658324-24658763,24659167-24659387,24659765-24659827,
           24659849-24660102
          Length = 325

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 150 GRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGR 254
           G+       D E E VEAEVD  + +S+KK ++ R
Sbjct: 116 GKENEVATPDAEKEDVEAEVDGDDPMSKKKRRQMR 150


>09_01_0165 -
           2436769-2437442,2438159-2438224,2438318-2438415,
           2439856-2440214
          Length = 398

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 345 AAXNSRPLFFFGAVSSILPFSSCPFVSPAASFR 247
           AA +SR L    A  S+LP +  PF  PAA  R
Sbjct: 16  AAASSRFLRPLAAAGSLLPAALAPFAPPAAGAR 48


>03_02_0112 +
           5689439-5689474,5689629-5689778,5690194-5690361,
           5691334-5691458,5691914-5692007,5692844-5692942,
           5693730-5693910,5694051-5694166,5694758-5694913,
           5695226-5695354,5695554-5695718
          Length = 472

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 156 GKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRK 257
           G+  +   P    +E E DEK+  S K TK G+K
Sbjct: 429 GQVMMEPKPVFARIETETDEKDQSSSKATKGGKK 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,537,409
Number of Sequences: 37544
Number of extensions: 165329
Number of successful extensions: 543
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)