Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0740.Seq
         (527 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   1e-12
SB_55572| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_7548| Best HMM Match : LRR_1 (HMM E-Value=8.7e-14)                  29   3.1  
SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)                      28   4.1  
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              27   7.2  
SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)                      27   7.2  
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 31/44 (70%), Positives = 37/44 (84%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXIXE 378
           MAR+LSG+VKEILGT QSVGCTV+G  PHD+ID INSG + I +
Sbjct: 121 MARHLSGTVKEILGTCQSVGCTVDGMAPHDVIDKINSGEIEIED 164


>SB_55572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 236 ENQTRKEAAGDTNGQDENGKIEETAPKK 319
           E+++  E    +  +DE+GK+EE AP K
Sbjct: 26  ESKSESEDESKSESEDESGKVEERAPHK 53


>SB_7548| Best HMM Match : LRR_1 (HMM E-Value=8.7e-14)
          Length = 384

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
 Frame = -1

Query: 293 YHSHLVHL--CHRQ---LPSAFGFLFRYNVLFIN 207
           Y  HLVHL   + +   LP +FG+LF    LFIN
Sbjct: 82  YLPHLVHLDLSYNRIGFLPDSFGYLFHLETLFIN 115


>SB_32309| Best HMM Match : C1_3 (HMM E-Value=7.3)
          Length = 193

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 467 TAQSVGCTVEGRPPHDLIDDINSG 396
           T   + C VE  PPH++ D +N G
Sbjct: 150 TLNQLYCPVEPNPPHNMFDHVNLG 173


>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 129 DNDAPKKGRGKAKVVEDPETESVEA--EVDEKNIVSEKKTKRGRKLP 263
           DN   K  +    ++ D + ES ++  + D K     KKT  G+K P
Sbjct: 273 DNKKAKADKASISIISDEKEESKDSTKKTDSKKPSDTKKTPDGKKTP 319


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +3

Query: 141  PKKGRGKAKVVEDPETESVEAEVDEKNIVSEK--KTKRGRK 257
            PK+  GKA       T    ++ DE     EK   T+RGRK
Sbjct: 1377 PKRATGKASAKPTRSTRGKRSQTDEAPAEGEKPTSTRRGRK 1417


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 144 KKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKLPVTQM 275
           KK   K+K  E P+T+    +  +K   S KK+++G+K  +  M
Sbjct: 825 KKSDAKSKSSEKPKTKRSADKEAKKQKKSHKKSEKGKKKNIVVM 868


>SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)
          Length = 584

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 135 DAPKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRK 257
           D  K  +GK K  E+ E E  ++E +EK    + KTK+G+K
Sbjct: 484 DGKKTKKGKKK--EESEEEEEKSE-EEKKSKKKTKTKKGKK 521


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 156 GKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKLPVTQM 275
           GK +VVE+   E V+    +      KK K+G+K  + ++
Sbjct: 44  GKVEVVEEKAAEEVKVTKSKGKKKKSKKPKKGKKKKIVKV 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,050,810
Number of Sequences: 59808
Number of extensions: 194724
Number of successful extensions: 837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)