Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0740.Seq
         (527 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L06505-1|AAA36157.1|  165|Homo sapiens ribosomal protein L12 pro...    71   2e-12
BC105603-1|AAI05604.1|  165|Homo sapiens ribosomal protein L12 p...    71   2e-12
BC094831-1|AAH94831.1|  165|Homo sapiens ribosomal protein L12 p...    71   2e-12
BC059950-1|AAH59950.1|  132|Homo sapiens RPL12 protein protein.        71   2e-12
BC050644-1|AAH50644.1|  165|Homo sapiens ribosomal protein L12 p...    71   2e-12
AL445222-15|CAH72929.1|  165|Homo sapiens ribosomal protein L12 ...    71   2e-12
AB209471-1|BAD92708.1|  197|Homo sapiens ribosomal protein L12 v...    71   2e-12
AL021366-3|CAA16156.1|  165|Homo sapiens cICK0721Q.2 (60S Riboso...    65   1e-10

>L06505-1|AAA36157.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGAL 390
           +AR LSG++KEILGTAQSVGC V+GR PHD+IDDINSGA+
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 160


>BC105603-1|AAI05604.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGAL 390
           +AR LSG++KEILGTAQSVGC V+GR PHD+IDDINSGA+
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 160


>BC094831-1|AAH94831.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGAL 390
           +AR LSG++KEILGTAQSVGC V+GR PHD+IDDINSGA+
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 160


>BC059950-1|AAH59950.1|  132|Homo sapiens RPL12 protein protein.
          Length = 132

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGAL 390
           +AR LSG++KEILGTAQSVGC V+GR PHD+IDDINSGA+
Sbjct: 88  LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 127


>BC050644-1|AAH50644.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGAL 390
           +AR LSG++KEILGTAQSVGC V+GR PHD+IDDINSGA+
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 160


>AL445222-15|CAH72929.1|  165|Homo sapiens ribosomal protein L12
           protein.
          Length = 165

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGAL 390
           +AR LSG++KEILGTAQSVGC V+GR PHD+IDDINSGA+
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 160


>AB209471-1|BAD92708.1|  197|Homo sapiens ribosomal protein L12
           variant protein.
          Length = 197

 Score = 71.3 bits (167), Expect = 2e-12
 Identities = 31/40 (77%), Positives = 37/40 (92%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGAL 390
           +AR LSG++KEILGTAQSVGC V+GR PHD+IDDINSGA+
Sbjct: 153 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAV 192


>AL021366-3|CAA16156.1|  165|Homo sapiens cICK0721Q.2 (60S Ribosomal
           Protein L12 LIKE protein) protein.
          Length = 165

 Score = 65.3 bits (152), Expect = 1e-10
 Identities = 28/40 (70%), Positives = 35/40 (87%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGAL 390
           +AR LSG++KEI GTAQS+GC V+G  PHD+IDDINSGA+
Sbjct: 121 LARELSGTIKEIPGTAQSMGCNVDGHHPHDIIDDINSGAV 160


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,407,973
Number of Sequences: 237096
Number of extensions: 878082
Number of successful extensions: 6263
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6260
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5103531180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)