Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0740.Seq
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   5.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   5.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 328 PRIRGRFFFYI 360
           P+IRG F+F++
Sbjct: 251 PQIRGEFYFFL 261


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 227 YNVLFINFSFYRLRFRI 177
           + VLF+ FSF R R ++
Sbjct: 19  FGVLFVLFSFLRTRTKL 35


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 227 YNVLFINFSFYRLRFRI 177
           + VLF+ FSF R R ++
Sbjct: 19  FGVLFVLFSFLRTRTKL 35


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 328 PRIRGRFFFYI 360
           P+IRG F+F++
Sbjct: 251 PQIRGEFYFFL 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,493
Number of Sequences: 438
Number of extensions: 1649
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)