Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0740.Seq
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ...    57   6e-09
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ...    53   1e-07
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)            52   2e-07
At2g28720.1 68415.m03491 histone H2B, putative strong similarity...    29   1.9  
At5g50830.1 68418.m06297 expressed protein                             28   3.4  
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai...    27   5.9  
At4g31260.1 68417.m04437 hypothetical protein                          27   5.9  
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ...    27   5.9  
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    27   5.9  

>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
           RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
           PIR:T45883
          Length = 166

 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 26/42 (61%), Positives = 34/42 (80%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXI 384
           +A+ LSG+VKEILGT  SVGCTV+G+ P DL ++INSG + I
Sbjct: 122 IAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDI 163


>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
           RIBOSOMAL PROTEIN L12, Prunus armeniaca,
           SWISSPROT:RL12_PRUAR
          Length = 166

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 24/44 (54%), Positives = 32/44 (72%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXIXE 378
           +A+ LSG+V+EILGT  SVGCTV+G+ P DL  +I  G + I E
Sbjct: 122 IAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPE 165


>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
          Length = 166

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 23/44 (52%), Positives = 32/44 (72%)
 Frame = -1

Query: 509 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALXIXE 378
           +A+ LSG+V+EILGT  SVGCTV+G+ P D+  +I  G + I E
Sbjct: 122 IAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPE 165


>At2g28720.1 68415.m03491 histone H2B, putative strong similarity to
           histone H2B Arabidopsis thaliana GI:2407802, Gossypium
           hirsutum SP|O22582; contains Pfam profile PF00125 Core
           histone H2A/H2B/H3/H4
          Length = 151

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +3

Query: 138 APKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKRGRKLP 263
           APK G+  A+     +  + E +V EK   +EKK K G+KLP
Sbjct: 2   APKAGKKPAEKKPAEKAPAEEEKVAEK-APAEKKPKAGKKLP 42


>At5g50830.1 68418.m06297 expressed protein 
          Length = 281

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
 Frame = +3

Query: 135 DAPKKGRGKAKVVEDP----ETESVEAEVDEKNIV--SEKKTKRGRKLPV 266
           D P     + K VED     ETESV  E+ E   +   EKK +RG++  +
Sbjct: 197 DVPSDDDDEEKDVEDARKSMETESVTTEIKEDGSIVKKEKKERRGKRFGI 246


>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
           Pfam profiles  PF00270:DEAD/DEAH box helicase and
           PF00271:  Helicase conserved C-terminal domain;
           identical to cDNA RH27 helicase, partial GI:4033334
          Length = 633

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 233 KENQTRKEAAGDTNGQDENGKIEETAPKKKSGRE 334
           K+   + +  GDTN +++    EE  PKKK  ++
Sbjct: 90  KKKNKKLQQRGDTNDEEDEVIAEEEEPKKKKKKQ 123


>At4g31260.1 68417.m04437 hypothetical protein 
          Length = 63

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 364 IRNIYSXMXKAPLLMSSIRSCGGLPSTV 447
           IR++Y    K+ + +  IRSCGG+ ++V
Sbjct: 28  IRSLYPDKVKSEIPIQDIRSCGGVLASV 55


>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
           significant) WD-40 repeats (PF0400); identical to WD-40
           repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 507

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 141 PKKGRGKAKVVEDPETESVEAEVDEKNIVSEKKTKR 248
           PKK   K K  ED +T S + + D K   S KKT++
Sbjct: 25  PKKRGRKPKTKEDSQTPSSQQQSDVKMKESGKKTQQ 60


>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 336 NSRPLFFFGAVSSILPFSSCPFVSPAASFRVW 241
           +S P  F  A ++I   SS P  SPA+S R+W
Sbjct: 142 SSSPFSFGSAPAAITSVSSGPAQSPASSPRLW 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,476,519
Number of Sequences: 28952
Number of extensions: 133281
Number of successful extensions: 522
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)