Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0739.Seq
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.32 
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    28   0.73 
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    26   2.9  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   3.9  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   9.0  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = -2

Query: 199 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 47
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +3

Query: 390 KRVSITADAVHRQRGXQMQLRAF*PQQRPRIRYQAYRYRR 509
           K V+++A + +++RG   +LR +  Q+    RYQ+ + +R
Sbjct: 187 KAVNLSAHSFNKKRGINAELRQYQEQKTEAERYQSQKEKR 226


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +2

Query: 122 TSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFTRFEHSNLFKVKL 292
           T    +++   +P   + G+      +P    I  C KY S+ ++   HS L  ++L
Sbjct: 208 TRKFLVKLAKALPDAKFFGIFDW---DPHGLCIYSCFKYGSNAYSHEPHSQLRNLQL 261


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 154 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 47
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 300 WADNFTLNKLECSKRVKMLLEYFVHGIIEYDLGSILLVF 184
           W    T+N L  ++ V   L+Y  +G++  D+ SIL V+
Sbjct: 488 WLFCVTVNSL--TQLVLKSLKYDTYGVVARDISSILAVY 524


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 215 NMISVLFCWFSELRGND 165
           N +S+L C FS L GND
Sbjct: 476 NQLSLLKCTFSNLDGND 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,047
Number of Sequences: 5004
Number of extensions: 36164
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)