Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0739.Seq
         (518 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   9e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               57   1e-08
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               57   1e-08
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   4e-08
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   5e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   6e-05
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   7e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.003
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.004
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_54293| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_33473| Best HMM Match : GST_N (HMM E-Value=0.028)                   28   5.3  
SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   5.3  
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)                  28   5.3  
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   7.0  
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)                    27   9.3  
SB_41737| Best HMM Match : zf-B_box (HMM E-Value=2.3e-10)              27   9.3  
SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)                   27   9.3  

>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 63.7 bits (148), Expect = 9e-11
 Identities = 31/38 (81%), Positives = 32/38 (84%)
 Frame = -1

Query: 116 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLT 3
           SWI  RRT+AKAFAK VFINQERKLE RRR DT LVLT
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41


>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 28/33 (84%), Positives = 29/33 (87%)
 Frame = -1

Query: 101 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLT 3
           RRT+AKAFAK VFINQERKLE RRR DT LVLT
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 28/33 (84%), Positives = 29/33 (87%)
 Frame = -1

Query: 101 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLT 3
           RRT+AKAFAK VFINQERKLE RRR DT LVLT
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 28/33 (84%), Positives = 29/33 (87%)
 Frame = -1

Query: 101 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLT 3
           RRT+AKAFAK VFINQERKLE RRR DT LVLT
Sbjct: 9   RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 41


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 28/33 (84%), Positives = 29/33 (87%)
 Frame = -1

Query: 101 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLT 3
           RRT+AKAFAK VFINQERKLE RRR DT LVLT
Sbjct: 11  RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 43


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = -1

Query: 98  RTSAKAFAKGVFINQERKLEVRRRLDTALVLT 3
           RT+AKAFAK VFINQERKLE RRR DT LVLT
Sbjct: 29  RTTAKAFAKNVFINQERKLEDRRRSDTVLVLT 60


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = -1

Query: 98 RTSAKAFAKGVFINQERKLEVRRRLDT 18
          RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2  RTTAKAFAKNVFINQERKLEDRRRSDT 28


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 23/34 (67%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
 Frame = -1

Query: 101 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLT 3
           R+T+  ++ AK VFINQERKLE RRR DT LVLT
Sbjct: 8   RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLT 41



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 123 VKFLDRRKTNISESICQRCFHQSRTKV 43
           VKFLD RKTN  ESI +  F     K+
Sbjct: 2   VKFLDLRKTNYCESIAKNVFINQERKL 28


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 21/34 (61%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
 Frame = -1

Query: 101 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLT 3
           R+T+  ++  + VFINQERKLE RRR DT LVLT
Sbjct: 8   RKTNYCESICQDVFINQERKLEDRRRSDTVLVLT 41



 Score = 33.9 bits (74), Expect = 0.081
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -3

Query: 123 VKFLDRRKTNISESICQRCFHQSRTKV 43
           VKFLD RKTN  ESICQ  F     K+
Sbjct: 2   VKFLDLRKTNYCESICQDVFINQERKL 28


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = -3

Query: 123 VKFLDRRKTNISESICQRCFHQSRTKV 43
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = -1

Query: 101 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLT 3
           R+T+  ++  +  FINQERKLE RRR DT LVLT
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLT 41


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/27 (62%), Positives = 18/27 (66%)
 Frame = -3

Query: 123 VKFLDRRKTNISESICQRCFHQSRTKV 43
           VKFLD RKTN  ESICQ CF     K+
Sbjct: 2   VKFLDLRKTNYCESICQECFINQERKL 28



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = -1

Query: 101 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLT 3
           R+T+  ++  +  FINQERKLE RRR DT LVLT
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLT 41


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = -1

Query: 101 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLT 3
           R+T+  ++  +  FINQERKLE RRR DT LVLT
Sbjct: 8   RKTNYCESICQECFINQERKLEDRRRSDTVLVLT 41



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 120 KFLDRRKTNISESICQRCFHQSRTKV 43
           + L  RKTN  ESICQ CF     K+
Sbjct: 3   EILGFRKTNYCESICQECFINQERKL 28


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 185 KTNKIEPRSYSIIPCTKYSSSIFTRFEHSNLFKVKLSAHL 304
           K + ++   Y+ +    +S   F RFEH+N  ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764


>SB_54293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 468 QRPRIRYQAYRYRRLEG 518
           +RPR  YQAYRYRR  G
Sbjct: 90  RRPRRDYQAYRYRRPRG 106


>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 184 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 74
           Q  EV  +++  GH Y C   GE++ S++D H+   +P
Sbjct: 7   QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44


>SB_33473| Best HMM Match : GST_N (HMM E-Value=0.028)
          Length = 276

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 465 QQRPRIRYQAYRYRRLEG 518
           ++RP+  +QAYRYRR  G
Sbjct: 213 EKRPKFTHQAYRYRRPRG 230


>SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 205

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 376 TICSANVSVSPRMRCTDSAAXKCNYEL 456
           T C+ NV  S  ++C DS    CN E+
Sbjct: 157 TECACNVHGSASLQCDDSGVCPCNLEV 183


>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 683

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 376 TICSANVSVSPRMRCTDSAAXKCNYEL 456
           T C+ NV  S  ++C DS    CN E+
Sbjct: 199 TECACNVHGSASLQCDDSGVCPCNLEV 225


>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 105 DDPRISPLTSQYEC 146
           DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254


>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
          Length = 575

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 209 SYSIIPCTKYSSSIFTRFEH 268
           +Y  IPCT Y+ ++++RF H
Sbjct: 127 TYRGIPCTNYTENLWSRFWH 146


>SB_41737| Best HMM Match : zf-B_box (HMM E-Value=2.3e-10)
          Length = 511

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 218 IIPCTKYSSSIFTRFEHSNLFKVKLSAHLDTHRRAPR*DFD 340
           I+   K  +S  T  E +  F  K   HLD ++RA R D D
Sbjct: 54  ILERAKKVTSKLTDIEQAMAFVEKAQQHLDENKRAARRDLD 94


>SB_15223| Best HMM Match : ASC (HMM E-Value=1.8e-19)
          Length = 605

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 209 SYSIIPCTKYSSSIFTRFEH 268
           +Y  IPCT Y+ ++++RF H
Sbjct: 58  TYRGIPCTNYTENLWSRFWH 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,704
Number of Sequences: 59808
Number of extensions: 277400
Number of successful extensions: 947
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)