Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0738.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    43   4e-05
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    30   0.28 
SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.5  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.5  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 22/39 (56%), Positives = 27/39 (69%)
 Frame = -3

Query: 654 LGKSMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEKF 538
           +G+SMD D MV +M YR+ DG   P M+FFK GL  EKF
Sbjct: 132 IGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 159 HKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRQMFWILRCL 1
           HK   HQ Y I+RC    +   N   M     DC    HK CY ++  + +C+
Sbjct: 406 HKFLQHQFYQIMRCALCGEFLKNAAGMQCI--DCHYTCHKKCYPKV--VTKCI 454


>SPCC5E4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 101

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 580 WYLRTIKVSIFHHGNHAITIHRLPQ 654
           WY++T K+SI    N+  + +R PQ
Sbjct: 12  WYMKTDKISIDETSNNMSSKYRAPQ 36


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +3

Query: 582 VFAYHQSLYIPSWQPC-HHN 638
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,870
Number of Sequences: 5004
Number of extensions: 51719
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)