Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0738.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0482 + 22614097-22614729,22614859-22615182,22615291-226153...    35   0.071
11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    32   0.50 
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534...    30   1.5  
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69...    29   2.7  
05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213     28   6.2  

>01_05_0482 +
           22614097-22614729,22614859-22615182,22615291-22615396,
           22615628-22615668
          Length = 367

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = +1

Query: 19  EHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTV 177
           E +AVAA +   P     V+ P A  +TL+    A DP+  VVA  MD V TV
Sbjct: 2   EDVAVAAALAPAPATA-PVFSPAAAGLTLIAAAAA-DPIAAVVAGAMDGVVTV 52


>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -3

Query: 690 ILGRV*ETSVLLLGKSMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 541
           +LG++ +     +G+SM  DG +    Y+D  G   P  ++F HGL+E K
Sbjct: 121 LLGKLKDLQ-FFVGESMHDDGGLVFAYYKD--GATDPTFLYFSHGLKEVK 167


>09_04_0741 -
           19852339-19852497,19853185-19853246,19853352-19853415,
           19853561-19853614,19853744-19853890,19854460-19854564,
           19854651-19854794,19854987-19855093,19855613-19855712,
           19855804-19855833,19856492-19856608,19856705-19856828,
           19857143-19857189,19857272-19857400,19857777-19857852,
           19858446-19858543,19858630-19858671,19858811-19859044
          Length = 612

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 585 FAYHQSLYIPSWQPCHHNP*TSPVKELKFLKPCRGL 692
           F YH  +Y+ SW  C H+   S  K++K + P R +
Sbjct: 264 FLYHGRMYVSSWHICFHSNVFS--KQIKVMLPLRDI 297


>03_01_0085 +
           690618-691012,691114-691193,691775-691959,692363-693320,
           693391-693518,693951-694010,694113-694163,694704-694821,
           694990-695915,695916-697707,697810-697943,698029-698526
          Length = 1774

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = -3

Query: 210 WNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCI 46
           WNC W  H    C   +H  CY   Y + +       +++ R    F   C++ I
Sbjct: 156 WNCGW--HICSSCEKAVHYMCYTCTYSLCKVCIKQGKFFSVRGTKGFCDTCYSTI 208


>05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213
          Length = 491

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 377 IAAANSRPLRCLSLNQCYWNCRW 309
           I AA+SR L+  + ++C W+CRW
Sbjct: 443 IVAAHSRRLQSFN-SRCAWSCRW 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,061,288
Number of Sequences: 37544
Number of extensions: 339014
Number of successful extensions: 844
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)