Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0738.Seq
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 35 0.055
SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1) 33 0.17
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 32 0.51
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23) 31 0.90
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 30 2.1
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_19226| Best HMM Match : I-set (HMM E-Value=0) 28 6.3
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3) 28 6.3
SB_40994| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 35.1 bits (77), Expect = 0.055
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -3
Query: 183 HHDCWNCIHKCCY-HQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRQMFWILR 7
H+ C+ H CCY H Y C + Y C + H+H+ C+ + CYR + R
Sbjct: 13 HNRCYRHHHYCCYCHHRY----CYYRHHHY--CWYRHHYHYPCYRHYYHRCYRHHYCCYR 66
>SB_39684| Best HMM Match : Tom7 (HMM E-Value=5.1)
Length = 424
Score = 33.5 bits (73), Expect = 0.17
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +1
Query: 4 TAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVM 183
+ K+ H+ + + V T V H P V VTLV+ +A++ VH+ + + V T+
Sbjct: 321 STKEVVHIPLVVTLLKV-TSAKVVVHIPLV-VTLVKVTSAKEVVHIPLVVTLVKV-TIAK 377
Query: 184 KVYHPPAVPVTLIRIQTA 237
V H P V VTL+++ +A
Sbjct: 378 VVVHIPLV-VTLVKVTSA 394
Score = 31.9 bits (69), Expect = 0.51
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +1
Query: 4 TAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVM 183
+AK H+ + + V + + V H P V VTLV+ +A++ VH+ + + V T
Sbjct: 177 SAKVMVHIPLVVTLVKVTSAEL-VVHIPLV-VTLVEVTSAKEVVHIPLVVTLLKV-TSAE 233
Query: 184 KVYHPPAVPVTLIRIQTA 237
+V H P V VTL+++ +A
Sbjct: 234 EVVHIPLV-VTLLKVTSA 250
Score = 31.9 bits (69), Expect = 0.51
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +1
Query: 58 TVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAVPVTLIRIQTA 237
T EV H P V VTL++ +A++ VH+ + + V T V H P V VTL+++ +A
Sbjct: 212 TSAKEVVHIPLV-VTLLKVTSAEEVVHIPLVVTLLKV-TSAKVVVHIPLV-VTLVKVTSA 268
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 4 TAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHL-VVAALMDTVPTVV 180
+AK H+ + + V + + V H P V VTLV+ +A+ VH+ +V L++ V
Sbjct: 123 SAKVMVHIPLVVTLVKVTSAEL-VVHIPLV-VTLVEVTSAKVVVHIPLVVTLVNVTSAKV 180
Query: 181 MKVYHPPAVPVTLIRIQTA 237
M H P V VTL+++ +A
Sbjct: 181 M--VHIPLV-VTLVKVTSA 196
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +1
Query: 4 TAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVM 183
+A++ H+ + + V T V H P V VTLV+ +A+ VH+ + + V T
Sbjct: 231 SAEEVVHIPLVVTLLKV-TSAKVVVHIPLV-VTLVKVTSAELVVHIPLVVTLVEV-TSAK 287
Query: 184 KVYHPPAVPVTLIRIQTA 237
V H P V VTL+++ +A
Sbjct: 288 VVVHIPLV-VTLVKVTSA 304
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/78 (30%), Positives = 41/78 (52%)
Frame = +1
Query: 4 TAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVM 183
+A++ H+ + + V T V H P V VTLV+ +A+ VH+ + + V + +
Sbjct: 87 SAEEVVHIPLVVTLLKV-TSAKVVVHIPLV-VTLVEVTSAKVMVHIPLVVTLVKVTSAEL 144
Query: 184 KVYHPPAVPVTLIRIQTA 237
V H P V VTL+ + +A
Sbjct: 145 -VVHIPLV-VTLVEVTSA 160
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +1
Query: 73 VYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAVPVTLIRIQTA 237
V H P V VTL++ +A++ VH+ + + V T V H P V VTL+ + +A
Sbjct: 73 VVHIPLV-VTLLKATSAEEVVHIPLVVTLLKV-TSAKVVVHIPLV-VTLVEVTSA 124
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 31.9 bits (69), Expect = 0.51
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 174 CWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCC 34
C+ + CY+ Y+ C CY+ C ++HH + C + CC
Sbjct: 476 CYYYCYCYCYYYCYYYCYCYCYYCCYY-CYCYYYYHH--YYCCYYCC 519
>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
Length = 197
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/63 (25%), Positives = 23/63 (36%)
Frame = -3
Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKC 37
C CRW + D C C + + R ++ C CRW + D C C
Sbjct: 94 CKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTC 149
Query: 36 CYR 28
+R
Sbjct: 150 RWR 152
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/63 (25%), Positives = 23/63 (36%)
Frame = -3
Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKC 37
C CRW + D C C + + R ++ C CRW + D C C
Sbjct: 111 CKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTC 166
Query: 36 CYR 28
+R
Sbjct: 167 RWR 169
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/60 (26%), Positives = 22/60 (36%)
Frame = -3
Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKC 37
C CRW + D C C + + R ++ C CRW I+ D C C
Sbjct: 128 CKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRINRQADIHRCKSTC 183
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/63 (23%), Positives = 22/63 (34%)
Frame = -3
Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKC 37
C C W + D C C + + R ++ C CRW + D C C
Sbjct: 77 CKSTCPWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTCRWRLDRQADIHTCKSTC 132
Query: 36 CYR 28
+R
Sbjct: 133 RWR 135
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = -3
Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMI 76
C CRW + D C C + I R +++C CRW +
Sbjct: 145 CKSTCRWRLDRQADIHTCKSTCRWR----INRQADIHRCKSTCRWQL 187
>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
Length = 1243
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Frame = -3
Query: 159 HKCCYHQMY-WILRCLSLNQC---YWNCR-WMIHFHHDCWNC-IHKCCYRQMFWIL 10
HKCCY ++ L+C +C ++N R + +H +N HKCC+ Q+ IL
Sbjct: 180 HKCCYGRIIPKYLKCEMFLRCGKNFYNLRDYRYCGNHYIFNRRFHKCCHNQVIPIL 235
>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1402
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Frame = -3
Query: 159 HKCCYHQMY-WILRCLSLNQC---YWNCR-WMIHFHHDCWNC-IHKCCYRQMFWIL 10
HKCCY ++ L+C +C ++N R + +H +N HKCC+ Q+ IL
Sbjct: 180 HKCCYGRIIPKYLKCEMFLRCGKNFYNLRDYRYCGNHYIFNRRFHKCCHNQVIPIL 235
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 138 MYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKCC 34
M + C N C +NC H+ + +C HKCC
Sbjct: 311 MQYYRGCAFANHCDFNC---THYINGSSDCNHKCC 342
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 234 CLNSNQCYWNCRWMIHFHHDCWNCIHKCC 148
C +N C +NC H+ + +C HKCC
Sbjct: 317 CAFANHCDFNC---THYINGSSDCNHKCC 342
>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
Length = 1500
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 25 LAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPA 204
+ V+ ++ V VV+ V VPV +V V +VV ++ V V + V PA
Sbjct: 1350 VVVSVVVVVVSVVVVVVVVVVVVPVVVVVVSVVVVVVPVVVVVVVVVVVVVSIVVVSVPA 1409
Query: 205 VPVTLI 222
V V LI
Sbjct: 1410 VVVVLI 1415
>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 28.3 bits (60), Expect = 6.3
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 25 LAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPA 204
+ V+ ++ V VV+ V VPV +V V +VV ++ V V + V PA
Sbjct: 365 VVVSVVVVVVSVVVVVVVVVVVVPVVVVVVSVVVVVVPVVVVVVVVVVVVVSIVVVSVPA 424
Query: 205 VPVTLI 222
V V LI
Sbjct: 425 VVVVLI 430
>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
Length = 811
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 4 TAKDPEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAAL 156
+A P HL A+ + P ++ +HP P L+Q + VH+VV L
Sbjct: 606 SAATPSHLGKVAVEEKRPRLLRSEFHPRRSP--LLQLLSNTPDVHVVVVEL 654
>SB_40994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 225 SNQCYWNCRWMIHFHHDCWNCI-HKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNC 49
S QC N ++ ++ C N I ++ C Q+ ++ + +QC N ++ ++ C N
Sbjct: 42 SAQCGNNIKYQLYVSAQCGNNIRYQLCMFQLSVVMISSTNSQCGNNIQYQLYVSAQCGNN 101
Query: 48 IHKCCY 31
I Y
Sbjct: 102 IRYQLY 107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,380,254
Number of Sequences: 59808
Number of extensions: 396168
Number of successful extensions: 877
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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