Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0738.Seq
         (698 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058482-1|AAZ67515.1|  172|Drosophila melanogaster GM13045p pro...    71   2e-12
AE014297-1255|AAF54603.1|  172|Drosophila melanogaster CG4800-PA...    71   2e-12
AE014296-2693|AAF49495.2|  199|Drosophila melanogaster CG13062-P...    29   4.6  

>AY058482-1|AAZ67515.1|  172|Drosophila melanogaster GM13045p
           protein.
          Length = 172

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 31/50 (62%), Positives = 39/50 (78%)
 Frame = -3

Query: 690 ILGRV*ETSVLLLGKSMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 541
           ILGR  E      G+SMDCDGMVA++EYR+ +G  +P++MFFKHGLEEEK
Sbjct: 123 ILGRFKELQ-FFTGESMDCDGMVALVEYREINGDSVPVLMFFKHGLEEEK 171


>AE014297-1255|AAF54603.1|  172|Drosophila melanogaster CG4800-PA
           protein.
          Length = 172

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 31/50 (62%), Positives = 39/50 (78%)
 Frame = -3

Query: 690 ILGRV*ETSVLLLGKSMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 541
           ILGR  E      G+SMDCDGMVA++EYR+ +G  +P++MFFKHGLEEEK
Sbjct: 123 ILGRFKELQ-FFTGESMDCDGMVALVEYREINGDSVPVLMFFKHGLEEEK 171


>AE014296-2693|AAF49495.2|  199|Drosophila melanogaster CG13062-PA
           protein.
          Length = 199

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +1

Query: 16  PEHLAVAALMDTVPTVVMEVYHPPAV----PVTLVQTQTAQDPVHL 141
           P H+    L+   PTVV  V HPP +    P  +++     DP HL
Sbjct: 145 PHHIIKPVLL---PTVVKTVVHPPIIKAYHPAPIIKAYHPYDPFHL 187



 Score = 29.1 bits (62), Expect = 6.1
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = +1

Query: 76  YHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYHPPAV----PVTLIRIQTA*D 243
           YH PA       T     P H++   L+   PTVV  V HPP +    P  +I+     D
Sbjct: 127 YHLPAAVSHQSSTVVHSVPHHIIKPVLL---PTVVKTVVHPPIIKAYHPAPIIKAYHPYD 183

Query: 244 P 246
           P
Sbjct: 184 P 184


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,232,069
Number of Sequences: 53049
Number of extensions: 571503
Number of successful extensions: 1478
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)