Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0738.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical p...    41   7e-04
U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like pr...    31   1.0  
Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical ...    29   3.2  
U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin fami...    27   9.8  

>Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical
           protein F25H2.11 protein.
          Length = 181

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 16/31 (51%), Positives = 23/31 (74%)
 Frame = -3

Query: 633 DGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 541
           +G VA++EYRD DGT++P +M  K  + EEK
Sbjct: 150 NGQVAIIEYRDVDGTEVPTLMLVKEAIIEEK 180


>U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like
           protein family protein11 protein.
          Length = 394

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +1

Query: 16  PEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQD-PVHLVVAALMDTVPTVVMKVY 192
           P+ L    + + +P  +  V  P  +P+TL   +  +  P  L    + DT+P  +    
Sbjct: 183 PKILPTIKIPEIIPLTLPTVKIPDIIPITLPTIKIPEIVPTKLPTVEVPDTIPKTLPTTK 242

Query: 193 HPPAVPVT 216
            P  VP+T
Sbjct: 243 IPDIVPIT 250


>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
 Frame = +1

Query: 4   TAKDPEHLAVAALMDTVPTVVMEVYHPPAVP--VTLVQTQTAQDPVHLVVAALMDTVPTV 177
           T+++P +  VA +M   P VV+        P   T+ Q      PV +V  A  +     
Sbjct: 450 TSEEPNNTTVAQVMPPNPPVVIVDPATSEEPNDTTVAQVMPPNPPVVIVDPATSEEPNDT 509

Query: 178 VMKVYHPPAVPVTLIRIQTA*DP 246
            +    PP  PV +    TA DP
Sbjct: 510 TVAQVMPPNPPVVISGPATAKDP 532



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
 Frame = +1

Query: 4   TAKDPEHLAVAALMDTVPTVVMEVYHPPAVP--VTLVQTQTAQDPVHLVVAALMDTVPTV 177
           T+++P     A +M   P VV+        P   T+ Q      PV +V  A  +     
Sbjct: 372 TSEEPNDTTAAPIMPPNPPVVISGPATSEEPNNTTVAQVMPPNPPVVIVDPATSEEPNDT 431

Query: 178 VMKVYHPPAVPVTLIRIQTA*DPGN 252
            +    PP  PV +    T+ +P N
Sbjct: 432 TVAPVMPPNPPVVISGPATSEEPNN 456


>AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical
           protein C45G7.4 protein.
          Length = 603

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 183 HHDCWNCIHKCCYHQMYWILRCLSLNQC 100
           H+ C +CI   C HQ Y++L  +    C
Sbjct: 45  HNFCESCIFSLCLHQEYYLLDSIKCPTC 72


>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical protein
            W02C12.1 protein.
          Length = 1372

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
 Frame = -1

Query: 386  HTTIAAANSRPLRCLSLNQC---YWNCRW 309
            HTT A   +   +C S NQC    +NC W
Sbjct: 1135 HTTAAPGATAESQCFSTNQCATGEYNCSW 1163


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = +1

Query: 31   VAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDT 165
            +A    T+ TV M    PP  P T   T T   P     + L  T
Sbjct: 1135 IAYRESTIDTVSMACVRPPTTPTTTTSTTTTTTPKLTTTSTLPST 1179


>AF067611-2|AAW88406.1| 2302|Caenorhabditis elegans Cadherin family
            protein 10 protein.
          Length = 2302

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = +1

Query: 16   PEHLAVAALMDTVPTVVMEVYHPPAVPVTLVQTQTAQDPVHLVVAALMDTVPTVVMKVYH 195
            P HL+   L  TVP+   E Y  P      V  Q  ++P HL     +  +P V ++   
Sbjct: 1424 PAHLSPRQLSPTVPS---EGYEIPIERRVTVPVQKPKEPAHLTENTPVPRIPGVTVE--- 1477

Query: 196  PPAVPVTLIR 225
             PA   T +R
Sbjct: 1478 DPAHQTTSLR 1487


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,512,104
Number of Sequences: 27780
Number of extensions: 302387
Number of successful extensions: 825
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)