Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0738.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    27   0.13 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    27   0.13 
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   6.4  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   6.4  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   6.4  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   6.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.5  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 174 CWNCIHKCCYHQMYWILRCLS-LNQCYW 94
           C NCIH   +  ++W+  C S +N C +
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIY 62



 Score = 25.8 bits (54), Expect = 0.40
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 60 CWNCIHKCCYRQMFWILRC 4
          C NCIH   +  +FW+  C
Sbjct: 35 CRNCIHPTVFSVLFWLGYC 53


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 174 CWNCIHKCCYHQMYWILRCLS-LNQCYW 94
           C NCIH   +  ++W+  C S +N C +
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIY 510



 Score = 25.8 bits (54), Expect = 0.40
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 60  CWNCIHKCCYRQMFWILRC 4
           C NCIH   +  +FW+  C
Sbjct: 483 CRNCIHPTVFSVLFWLGYC 501


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 275 LHESCYRGFPGSYAV*IRISVTGTAGG*YTFITTVGTVSISAATT 141
           ++E+ Y      Y+  IR+ V        T +TTV + + S  TT
Sbjct: 93  INETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSSEADSDVTT 137


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 275 LHESCYRGFPGSYAV*IRISVTGTAGG*YTFITTVGTVSISAATT 141
           ++E+ Y      Y+  IR+ V        T +TTV + + S  TT
Sbjct: 141 INETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSSEADSDVTT 185


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 275 LHESCYRGFPGSYAV*IRISVTGTAGG*YTFITTVGTVSISAATT 141
           ++E+ Y      Y+  IR+ V        T +TTV + + S  TT
Sbjct: 141 INETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSSEADSDVTT 185


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 275 LHESCYRGFPGSYAV*IRISVTGTAGG*YTFITTVGTVSISAATT 141
           ++E+ Y      Y+  IR+ V        T +TTV + + S  TT
Sbjct: 141 INETTYTDGSDDYSTLIRVRVIDVRPQNETILTTVSSEADSDVTT 185


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/38 (28%), Positives = 13/38 (34%)
 Frame = -3

Query: 204 CRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWN 91
           CR+  H    C  C    C  +M     C   N   WN
Sbjct: 737 CRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTWN 774


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,469
Number of Sequences: 438
Number of extensions: 3553
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)