Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0738.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi...    33   0.18 
At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family prote...    32   0.42 
At1g69280.1 68414.m07943 expressed protein                             30   1.7  
At3g61670.1 68416.m06911 expressed protein weak similarity to ex...    29   2.2  
At1g63820.1 68414.m07222 hypothetical protein                          29   3.9  
At1g53130.1 68414.m06016 stigma-specific Stig1 family protein si...    28   5.2  
At5g08730.1 68418.m01037 IBR domain-containing protein contains ...    28   6.8  

>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 603

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = -3

Query: 651 GKSMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEKF*MLDKK*LNNPNWRLDTFVFLF 472
           G   D   +   M Y+D       I+ +  HG  E+   M ++  + + N + D   FL 
Sbjct: 279 GSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFER--MRSENVQPDEITFLG 336

Query: 471 IYQSCPHPGR 442
           +  +C H GR
Sbjct: 337 LLNACSHTGR 346


>At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family protein
           low similarity to SP|Q02104 Lipase 1 precursor (EC
           3.1.1.3) (Triacylglycerol lipase) {Psychrobacter
           immobilis}, SP|P27747|ACOC_ALCEU Dihydrolipoamide
           acetyltransferase component of acetoin cleaving system
           (EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes
           eutrophus}; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 417

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -3

Query: 165 CIHKCCYHQMY-WILR-CLSLNQCYWNCRWMI-HFHHDCWNCIH 43
           C   C +H+++ W+++ C+   + +W  + +  H HH  W+ +H
Sbjct: 292 CFIICKHHKIWEWLIKLCIGKREIHWKIKDITRHTHHSAWHSMH 335


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
 Frame = -3

Query: 234 CLNSNQCYWNCRW-MIHFHHDCWNCIHKC-CYHQMYWILRCLSLNQCYWN--CRWMIHFH 67
           C N+  C+  CR     ++  C   +  C C+    W         C +N  C W+   H
Sbjct: 305 CKNTGPCFSCCRLPSCGYNFFCCKRLKCCPCFSWCRW-------PSCDYNSSCGWLFCCH 357

Query: 66  HDCWNCIHKCC 34
             CW+C   CC
Sbjct: 358 WSCWSCC--CC 366


>At3g61670.1 68416.m06911 expressed protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 790

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 189 HFHHDCWNCIHKCCYHQMYW 130
           HFHH   +C H  CY   YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339



 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 75  HFHHDCWNCIHKCCYRQMFW 16
           HFHH   +C H  CY   +W
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339


>At1g63820.1 68414.m07222 hypothetical protein
          Length = 265

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 336 QTQAAQRPRIRGRYCCMQYIFLNTKLFSLVMRE 434
           +T A  RPR+RGR+     +F N K+ S   R+
Sbjct: 218 KTLADNRPRVRGRFARNDEVFENPKIASSFTRQ 250


>At1g53130.1 68414.m06016 stigma-specific Stig1 family protein
           similar to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 168

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -3

Query: 216 CYWNCRWMIHFHHDCWNCIHKCCYHQMYWILRCLSLNQCYWNCRWMIHFHHDCWNCIHKC 37
           C  +CR ++   ++C  C HKC + Q     RC     C   C ++    + C  C  KC
Sbjct: 105 CKKHCRNVLGDRNNCGRCGHKCGFGQ-----RC-----CGGVCTYVNFNPNHCGKCTRKC 154


>At5g08730.1 68418.m01037 IBR domain-containing protein contains
           similarity to Swiss-Prot:Q94981 ariadne-1 protein
           (Ari-1) [Drosophila melanogaster]
          Length = 500

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 365 NSRPLRCLSLNQCYWNCRWSIHFHHDSWNC 276
           N R + C+  N   W C  +   H  +WNC
Sbjct: 255 NYRLINCICSNNFCWICLRTEEQHQGNWNC 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,569,672
Number of Sequences: 28952
Number of extensions: 270709
Number of successful extensions: 648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)