Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0737.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    26   6.0  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   7.9  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   7.9  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.9  

>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +2

Query: 254 TLYYYYWKLRGFCLSTIN-IQQA--ALVLVNFVFEAIVYLSLFQCL 382
           TL+   W +    LS  N +Q+   AL +   +F+A+ + + FQCL
Sbjct: 52  TLFILSWVVASIPLSVYNQVQELNIALKVQPELFQALAFTTFFQCL 97


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 192 DTNACVSL*SMESGILSDYVELCTIITGN*EVFV 293
           D   C+SL   + GILS   E C + +GN + F+
Sbjct: 493 DNQGCISLIEDKLGILSLLDEECRLPSGNHQSFL 526


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 222 MESGILSDYVELCTIITGN*EVFVL 296
           ++S +L D+V L  I+ GN EV +L
Sbjct: 297 IDSEVLDDFVVLLDILNGNKEVIML 321


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 602 VVLTEFVHYSYFCSRMSRYW 661
           V +  FV  SY C+  S+YW
Sbjct: 282 VYVASFVMLSYVCAATSKYW 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,454
Number of Sequences: 5004
Number of extensions: 52814
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)