Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0737.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U41540-10|AAK39228.1|  372|Caenorhabditis elegans Hypothetical p...    28   7.4  
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    28   7.4  

>Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical
           protein F46B6.2 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 557 EEQERLVNHHF---IVXFVVLTEFVHYSYFCSRMSRYWPISL 673
           E + RL ++H+   I  F+++  F H  Y C+    Y P+++
Sbjct: 173 ETKIRLYSYHYQVVISIFIIIVSFFHLRYCCTFFFLYLPLAI 214


>U41540-10|AAK39228.1|  372|Caenorhabditis elegans Hypothetical
           protein F35H12.1 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 250 LNFVLLLLEIKRFLS*YHQHTTGGAGTCKFC 342
           +NF L+LL++KR L       +   GT KFC
Sbjct: 342 INFQLILLDMKRLLQLQKGLESNSLGTKKFC 372


>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 674  PTKLASIGSFCYRNRNSEQIR 612
            P KLA +G +C+RN + E  R
Sbjct: 1257 PKKLAKLGEYCFRNSHCESQR 1277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,877,325
Number of Sequences: 27780
Number of extensions: 292717
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)