Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0737.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    25   0.69 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.9  
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        21   8.5  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 536 FRVLVLYEEQERLVNHHFIVXFVVLTEFVHYSYF 637
           F  LV++   ER + HH I  F   T  V  S+F
Sbjct: 186 FSRLVVFFRFERQIGHHLIQTFAPSTLVVMLSWF 219


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 688 VWYRGQRNWPVSAHS-ATEIGIVNK 617
           +W RG ++ P+SA S   E G++ K
Sbjct: 436 IWARGTKDIPISACSLPCEPGMIKK 460


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 353 LLRTQNLQVPAPPVV 309
           LL  + L VPAPPV+
Sbjct: 347 LLNEKTLAVPAPPVL 361


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 353 LLRTQNLQVPAPPVV 309
           LL  + L VPAPPV+
Sbjct: 347 LLNEKTLAVPAPPVL 361


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 353 LLRTQNLQVPAPPVV 309
           LL  + L VPAPPV+
Sbjct: 347 LLNEKTLAVPAPPVL 361


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 146 FPMILQLSSSEMNDYRHK 199
           FP  ++ +S  +NDY+HK
Sbjct: 657 FPANIEGTSYFLNDYKHK 674


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 688 VWYRGQRNWPVSAHS-ATEIGIVNK 617
           +W RG ++ P+SA S   E G++ K
Sbjct: 526 IWARGTKDIPISACSLPCEPGMIKK 550


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 403 RISLRAAKTLEQTEINNCFEHKIYKYQRRL 314
           R  L A+  L QT++   F+++  KY++ +
Sbjct: 11  RAELAASLGLTQTQVKIWFQNRRSKYKKMM 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,932
Number of Sequences: 438
Number of extensions: 4023
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)