Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0737.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64010.1 68414.m07250 serpin, putative / serine protease inhi...    29   3.9  
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot...    28   5.2  
At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR...    28   5.2  
At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR...    27   9.0  

>At1g64010.1 68414.m07250 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 185

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -2

Query: 652 AHSATEIGIVNKFGXXXXXXXXXXVNKPFLFFIQDEYTKQLLFTGRV 512
           A +     +V  FG           + PFLF I+++ T  +LF G++
Sbjct: 132 AEAIAATAVVGGFGCAFVKRIDFVADHPFLFMIREDKTGTVLFVGQI 178


>At5g10470.1 68418.m01213 kinesin motor protein-related TH65
           protein, Arabidopsis thaliana, EMBL:AJ001729; contains
           Pfam profile PF00225: Kinesin motor domain
          Length = 1273

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 458 LLNNSIVLYNPHRLSKDGDSSRKKQLFRVLVLYEEQE 568
           L + +I+L + HRL K+ +S  + Q+ + L L +EQ+
Sbjct: 529 LKSENIMLVDKHRLEKEQNSQLRNQIAQFLQLDQEQK 565


>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1167

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 403 RISLRAAKTLEQTEINNCFEHKIYKYQRRLLYVDGTKTKT 284
           +I+LR+ KTL  +  +N  E  +       LY+DGT  KT
Sbjct: 730 KINLRSLKTLILSNCSNLEEFWVISETLYTLYLDGTAIKT 769


>At5g46260.1 68418.m05695 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1205

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -2

Query: 139 ITRHNIV*IVFK*NFIR---CSNDLLSLTRSDDDVIISIVYG 23
           I    I  +VF  N+     C N+LL +   +D +II + YG
Sbjct: 62  IKESRIAVVVFSKNYASSSWCLNELLEIVNCNDKIIIPVFYG 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,665,305
Number of Sequences: 28952
Number of extensions: 257427
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)