Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0736.Seq
(399 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 138 5e-32
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 129 2e-29
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 120 1e-26
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 106 1e-22
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 92 4e-18
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 88 7e-17
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 80 1e-14
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 78 6e-14
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 63 2e-09
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 44 0.001
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 42 0.003
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 42 0.004
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 41 0.008
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 38 0.072
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 35 0.51
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 33 2.7
UniRef50_A6BE46 Cluster: Putative uncharacterized protein; n=2; ... 31 8.3
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 138 bits (333), Expect = 5e-32
Identities = 68/105 (64%), Positives = 79/105 (75%)
Frame = -2
Query: 398 GXVINNXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHT 219
G +I N AST+YDLS+KSI P+GGF HYGEV +G GT K ++TLRKSL V T
Sbjct: 296 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQT 355
Query: 218 XRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 84
R ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKDRI +E
Sbjct: 356 KRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 129 bits (312), Expect = 2e-29
Identities = 63/104 (60%), Positives = 74/104 (71%)
Frame = -2
Query: 398 GXVINNXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHT 219
G ++ N AST YD++ KSITP+GGFPHYGEVN +G GT K +ITLRKSL VH
Sbjct: 296 GKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHH 355
Query: 218 XRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 87
R A+E I LKFIDT+SKFGHGRFQT +K AFMG KK +E
Sbjct: 356 SRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKE 399
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 120 bits (289), Expect = 1e-26
Identities = 61/99 (61%), Positives = 71/99 (71%)
Frame = -2
Query: 383 NXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAAL 204
N STE+DL++K+ITPMGGFP YG VN +G G K +ITLRKSL T R A
Sbjct: 250 NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAH 309
Query: 203 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 87
EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 310 EKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 106 bits (255), Expect = 1e-22
Identities = 54/100 (54%), Positives = 65/100 (65%)
Frame = -2
Query: 383 NXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAAL 204
N A+T YDL+ K+ITPMGGF YG V +G G + +ITLR+ + T R
Sbjct: 350 NQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAGPRRRVITLRRPMAPQTSRKLT 409
Query: 203 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 84
EKI LKFIDTSSK GHGRFQT +K+ + G LKKDRIR E
Sbjct: 410 EKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLKKDRIRRE 449
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 91.9 bits (218), Expect = 4e-18
Identities = 48/100 (48%), Positives = 63/100 (63%)
Frame = -2
Query: 398 GXVINNXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHT 219
G +I N AST+Y KSI+P+GG H G+V + GT K +++L KSL + T
Sbjct: 244 GKIIKNNASTDYT---KSISPLGGCIHCGKVTNDFVMLKDCLVGTKKRVLSLCKSLLMRT 300
Query: 218 XRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 99
+ L+K+N KFIDT+SKFGHG FQ +K FMG LKKD
Sbjct: 301 KQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLKKD 340
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 87.8 bits (208), Expect = 7e-17
Identities = 51/105 (48%), Positives = 63/105 (60%)
Frame = -2
Query: 398 GXVINNXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHT 219
G +I N A TEY LS+KSI +GGF HYGEV +G T K +T+ K L V T
Sbjct: 274 GKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLKGCAVRT-KKHLTICKYLLVQT 332
Query: 218 XRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 84
+ AL+KI+ K DT+ K GHG FQT K AF+G LKK+ EE
Sbjct: 333 IQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLKKECTAEE 377
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 80.2 bits (189), Expect = 1e-14
Identities = 40/62 (64%), Positives = 47/62 (75%)
Frame = -2
Query: 269 GT*KAIITLRKSLRVHTXRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIR 90
GT K ++TL KS V T ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 89 GTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQTA 148
Query: 89 EE 84
+E
Sbjct: 149 KE 150
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 78.2 bits (184), Expect = 6e-14
Identities = 39/67 (58%), Positives = 46/67 (68%)
Frame = -2
Query: 398 GXVINNXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHT 219
G +I N AST+YDLS+KSI P+GGF HYGEV +G GT K ++TLRKSL V T
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQT 60
Query: 218 XRAALEK 198
R ALEK
Sbjct: 61 KRRALEK 67
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 63.3 bits (147), Expect = 2e-09
Identities = 33/78 (42%), Positives = 47/78 (60%)
Frame = -2
Query: 350 KSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAALEKINLKFIDTS 171
KS+ MGGF +G +N +G G+ K I LRK+++ EKI LK++DTS
Sbjct: 288 KSVNCMGGFKKFGFINNDYLIIKGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTS 347
Query: 170 SKFGHGRFQTPADKAAFM 117
SK GHGR+++ ADK + M
Sbjct: 348 SKRGHGRYESSADKFSKM 365
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 44.0 bits (99), Expect = 0.001
Identities = 24/65 (36%), Positives = 34/65 (52%)
Frame = -2
Query: 353 EKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAALEKINLKFIDT 174
E +TP GGF HYGEV +G G K ++ R +R HT + ++L ++ T
Sbjct: 296 ESDVTPAGGFLHYGEVTNPYMVLEGSLPGPAKRLLRFRDPVRPHTN---VFDVDLTYVST 352
Query: 173 SSKFG 159
SSK G
Sbjct: 353 SSKQG 357
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 42.3 bits (95), Expect = 0.003
Identities = 24/52 (46%), Positives = 27/52 (51%)
Frame = -3
Query: 265 PKKRSLLLESLCVCIQXGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 110
PK LL S C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 52 PKSLPLLAHSPCWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 41.9 bits (94), Expect = 0.004
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = -2
Query: 356 SEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAALEKINLKFID 177
+E ITP GGFPHYG V G G K II +R ++R + +++ + ++
Sbjct: 301 TEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVS 360
Query: 176 TSSK 165
SK
Sbjct: 361 VESK 364
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 41.1 bits (92), Expect = 0.008
Identities = 24/65 (36%), Positives = 32/65 (49%)
Frame = -2
Query: 353 EKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAALEKINLKFIDT 174
E ITP GGF HYGEV QG G K +I R + R R +++ ++ T
Sbjct: 276 ESQITPAGGFLHYGEVKNHYMIIQGSLPGPAKRLIRFRDAAR---PRREQPPVDITYVST 332
Query: 173 SSKFG 159
+SK G
Sbjct: 333 ASKQG 337
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 37.9 bits (84), Expect = 0.072
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = -2
Query: 344 ITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAALEKINLKFIDTSSK 165
ITP GGF HYG + +G G K +I LR+++R + +I +I T+SK
Sbjct: 275 ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPEIT--YISTTSK 332
Query: 164 FG 159
G
Sbjct: 333 QG 334
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 35.1 bits (77), Expect = 0.51
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -2
Query: 356 SEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLR 228
S K I P GG+PHYG V +G G K ++ LR ++R
Sbjct: 270 SLKEINPPGGWPHYGLVRSQFIIVEGSVPGAVKRLVRLRHAIR 312
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 32.7 bits (71), Expect = 2.7
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -2
Query: 350 KSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAALEKINLKFIDTS 171
+ ITP GGF HYG + +G G K ++ +R ++R +I ++ T
Sbjct: 276 EEITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAVRPKNMPKQAPEIT--YLSTQ 333
Query: 170 SKFG 159
SK G
Sbjct: 334 SKMG 337
>UniRef50_A6BE46 Cluster: Putative uncharacterized protein; n=2;
Clostridiales|Rep: Putative uncharacterized protein -
Dorea longicatena DSM 13814
Length = 152
Score = 31.1 bits (67), Expect = 8.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 303 VYFTIMGETSHWCNGFLRQVILSRCXV 383
++FT GE HW + FLRQV+ RC +
Sbjct: 42 MFFTYQGELVHWQDDFLRQVL--RCSI 66
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 354,000,160
Number of Sequences: 1657284
Number of extensions: 5872711
Number of successful extensions: 12346
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12334
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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