Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0736.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   3.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   4.5  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   5.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    20   7.8  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    20   7.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    20   7.8  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 114 YTQEGSYSRRSCGY 73
           Y Q  +Y   SCGY
Sbjct: 338 YDQSSAYDASSCGY 351


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -1

Query: 339 TNGRFPPLW 313
           T GR PP+W
Sbjct: 216 TEGRLPPVW 224


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
          5-like protein protein.
          Length = 162

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -1

Query: 87 RSCGYHNP 64
          ++CGYH+P
Sbjct: 37 KACGYHSP 44


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 196 STSNSLTPRPSSVMVDSRRRLTRLHSWVHS 107
           +T+N++   P+SV  +S       H +  S
Sbjct: 457 NTNNAIMTPPASVQTESSDNYNSFHQFYSS 486


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 342 NGFLRQVILSRCXVVNN 392
           N FLRQV   RC    N
Sbjct: 168 NVFLRQVFTCRCKDYKN 184


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 196 STSNSLTPRPSSVMVDSRRRLTRLHSWVHS 107
           +T+N++   P+SV  +S       H +  S
Sbjct: 405 NTNNAIMTPPASVQTESSDNYNSFHQFYSS 434


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,465
Number of Sequences: 336
Number of extensions: 1353
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)