Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0736.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   114   4e-27
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   114   4e-27
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   1.4  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    24   7.6  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    24   10.0 

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  114 bits (275), Expect = 4e-27
 Identities = 55/93 (59%), Positives = 66/93 (70%)
 Frame = -2

Query: 377 ASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAALEK 198
           AST++D +EK ITPMGGF  YG V        G   G  K ++TLRKSL  HT R ALE 
Sbjct: 294 ASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEP 353

Query: 197 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 99
           ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 354 VSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  114 bits (275), Expect = 4e-27
 Identities = 55/93 (59%), Positives = 66/93 (70%)
 Frame = -2

Query: 377 ASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAALEK 198
           AST++D +EK ITPMGGF  YG V        G   G  K ++TLRKSL  HT R ALE 
Sbjct: 294 ASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEP 353

Query: 197 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 99
           ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 354 VSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 120 HGYTQEGSYSRRSCGYHNPS 61
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 187 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVF 92
           NS+ PR   +    R+ L  L +  HS+R  F
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDF 645


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1073

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 248  TLRKSLRVHTXRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 93
            +LR S+ V    +    +NL   DTSS+ G   F     K  F  +  KDR+
Sbjct: 939  SLRDSVAVFQYDSENNSLNLVCSDTSSRLGIDCFYISQKKLLF--SCDKDRL 988


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,463,157
Number of Sequences: 5004
Number of extensions: 24994
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)