Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0736.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   109   1e-24
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   101   2e-22
11_01_0119 - 931934-932359,933409-933564                               27   5.5  
12_01_0126 - 953586-953637,953890-954554                               26   9.5  
11_01_0116 - 896184-896849                                             26   9.5  

>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  109 bits (261), Expect = 1e-24
 Identities = 54/94 (57%), Positives = 64/94 (68%)
 Frame = -2

Query: 386 NNXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAA 207
           ++ A TE+D +EK ITPMGGFPHYG V       +G   G  K ++TLR+SL   T R A
Sbjct: 295 SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 354

Query: 206 LEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 105
           LE+I LKFIDTSSKFGHGRFQT  +K  F G LK
Sbjct: 355 LEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  101 bits (243), Expect = 2e-22
 Identities = 50/86 (58%), Positives = 60/86 (69%)
 Frame = -2

Query: 386 NNXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAA 207
           ++ A TE+D +EK ITPMGGFPHYG V       +G   G  K ++TLR+SL   T R A
Sbjct: 295 SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLA 354

Query: 206 LEKINLKFIDTSSKFGHGRFQTPADK 129
           LE+I LKFIDTSSKFGHGRFQT  +K
Sbjct: 355 LEEIKLKFIDTSSKFGHGRFQTTDEK 380


>11_01_0119 - 931934-932359,933409-933564
          Length = 193

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 129 GCIHGYTQEGSYSRRSCGYHNPSG 58
           G + G++ EGS+ RRSC   N  G
Sbjct: 110 GHVPGFSIEGSFRRRSCKIRNSVG 133


>12_01_0126 - 953586-953637,953890-954554
          Length = 238

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 114 YTQEGSYSRRSCGYHNPSGCCAA 46
           Y  EGSY RRSC   +  G   A
Sbjct: 149 YVVEGSYGRRSCAVRDARGDAVA 171


>11_01_0116 - 896184-896849
          Length = 221

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 114 YTQEGSYSRRSCGYHNPSGCCAA 46
           Y  EGSY RRSC   +  G   A
Sbjct: 149 YVVEGSYGRRSCAVRDARGDAVA 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,900,513
Number of Sequences: 37544
Number of extensions: 173044
Number of successful extensions: 443
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)