Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0736.Seq
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         111   3e-25
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.002
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)                37   0.005
SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)                   28   2.4  
SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)                   28   3.2  
SB_13681| Best HMM Match : Guanylate_cyc (HMM E-Value=2.8e-27)         26   9.8  

>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  111 bits (266), Expect = 3e-25
 Identities = 54/82 (65%), Positives = 60/82 (73%)
 Frame = -2

Query: 332 GGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAALEKINLKFIDTSSKFGHG 153
           GGFPHYG+VN      +G   G  K ++TLRKSL VHT R A EKI LKFIDTSSKFGHG
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSSKFGHG 274

Query: 152 RFQTPADKAAFMGTLKKDRIRE 87
           RFQ PA+K AFMG LK DR +E
Sbjct: 275 RFQHPAEKRAFMGMLKSDREKE 296


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = -2

Query: 398 GXVINNXASTEYDLSEKSITPM 333
           G VI N ASTEYDL++KSITPM
Sbjct: 25  GKVIKNNASTEYDLTDKSITPM 46


>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = -2

Query: 398 GXVINNXASTEYDLSEKSITPM 333
           G VI N ASTEYDL++KSI+PM
Sbjct: 296 GKVIKNNASTEYDLTDKSISPM 317


>SB_26123| Best HMM Match : NHL (HMM E-Value=3.5e-08)
          Length = 545

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 150 IPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVREN 25
           I D G   CIH +T +G Y    C + +  G        REN
Sbjct: 410 ISDDG-ANCIHVFTLDGQYVSNECSWESHEGYTHIAVTAREN 450


>SB_4606| Best HMM Match : HlyIII (HMM E-Value=0.002)
          Length = 458

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 18  NVYFHGRHLRLRSSRWGCGSRSFFANTILLE 110
           N+Y HG  L LR   +GCGS       +L++
Sbjct: 368 NIYSHGVRLFLRYLGYGCGSDGALPYCVLMD 398


>SB_13681| Best HMM Match : Guanylate_cyc (HMM E-Value=2.8e-27)
          Length = 517

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 90  RRSCGYHNPSGCCAALSVVRENKHLTM 10
           +RSCG      CC    ++RE K   M
Sbjct: 475 QRSCGVQALGACCRVKEILRERKEKEM 501


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,329,246
Number of Sequences: 59808
Number of extensions: 203108
Number of successful extensions: 402
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)