Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0736.Seq
         (399 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   156   1e-38
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   156   1e-38
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   156   1e-38
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   156   1e-38
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   156   1e-38

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  156 bits (378), Expect = 1e-38
 Identities = 76/105 (72%), Positives = 84/105 (80%)
 Frame = -2

Query: 398 GXVINNXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHT 219
           G VI N ASTEYDL++KSITPMGGFPHYGEVN      +G   G+ K IITLRKSL  HT
Sbjct: 307 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 366

Query: 218 XRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 84
            R+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 367 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 411


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  156 bits (378), Expect = 1e-38
 Identities = 76/105 (72%), Positives = 84/105 (80%)
 Frame = -2

Query: 398 GXVINNXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHT 219
           G VI N ASTEYDL++KSITPMGGFPHYGEVN      +G   G+ K IITLRKSL  HT
Sbjct: 296 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 355

Query: 218 XRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 84
            R+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 356 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  156 bits (378), Expect = 1e-38
 Identities = 76/105 (72%), Positives = 84/105 (80%)
 Frame = -2

Query: 398 GXVINNXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHT 219
           G VI N ASTEYDL++KSITPMGGFPHYGEVN      +G   G+ K IITLRKSL  HT
Sbjct: 283 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 342

Query: 218 XRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 84
            R+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 343 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  156 bits (378), Expect = 1e-38
 Identities = 76/105 (72%), Positives = 84/105 (80%)
 Frame = -2

Query: 398 GXVINNXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHT 219
           G VI N ASTEYDL++KSITPMGGFPHYGEVN      +G   G+ K IITLRKSL  HT
Sbjct: 283 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 342

Query: 218 XRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 84
            R+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 343 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  156 bits (378), Expect = 1e-38
 Identities = 76/105 (72%), Positives = 84/105 (80%)
 Frame = -2

Query: 398 GXVINNXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHT 219
           G VI N ASTEYDL++KSITPMGGFPHYGEVN      +G   G+ K IITLRKSL  HT
Sbjct: 296 GKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHT 355

Query: 218 XRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 84
            R+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 356 KRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,148,541
Number of Sequences: 53049
Number of extensions: 281283
Number of successful extensions: 858
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1149697725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)