Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0736.Seq
(399 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 120 4e-28
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 120 4e-28
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 120 4e-28
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 120 4e-28
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 120 4e-28
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 120 4e-28
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 120 4e-28
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 120 4e-28
Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical pr... 28 2.8
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 27 3.7
AF038615-7|AAB94147.1| 479|Caenorhabditis elegans Hypothetical ... 27 3.7
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 120 bits (289), Expect = 4e-28
Identities = 61/99 (61%), Positives = 71/99 (71%)
Frame = -2
Query: 383 NXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAAL 204
N STE+DL++K+ITPMGGFP YG VN +G G K +ITLRKSL T R A
Sbjct: 298 NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAH 357
Query: 203 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 87
EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 358 EKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 120 bits (289), Expect = 4e-28
Identities = 61/99 (61%), Positives = 71/99 (71%)
Frame = -2
Query: 383 NXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAAL 204
N STE+DL++K+ITPMGGFP YG VN +G G K +ITLRKSL T R A
Sbjct: 298 NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAH 357
Query: 203 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 87
EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 358 EKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 120 bits (289), Expect = 4e-28
Identities = 61/99 (61%), Positives = 71/99 (71%)
Frame = -2
Query: 383 NXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAAL 204
N STE+DL++K+ITPMGGFP YG VN +G G K +ITLRKSL T R A
Sbjct: 200 NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAH 259
Query: 203 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 87
EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 260 EKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 298
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 120 bits (289), Expect = 4e-28
Identities = 61/99 (61%), Positives = 71/99 (71%)
Frame = -2
Query: 383 NXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAAL 204
N STE+DL++K+ITPMGGFP YG VN +G G K +ITLRKSL T R A
Sbjct: 250 NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAH 309
Query: 203 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 87
EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 310 EKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 120 bits (289), Expect = 4e-28
Identities = 61/99 (61%), Positives = 71/99 (71%)
Frame = -2
Query: 383 NXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAAL 204
N STE+DL++K+ITPMGGFP YG VN +G G K +ITLRKSL T R A
Sbjct: 298 NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAH 357
Query: 203 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 87
EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 358 EKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 120 bits (289), Expect = 4e-28
Identities = 61/99 (61%), Positives = 71/99 (71%)
Frame = -2
Query: 383 NXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAAL 204
N STE+DL++K+ITPMGGFP YG VN +G G K +ITLRKSL T R A
Sbjct: 200 NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAH 259
Query: 203 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 87
EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 260 EKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 298
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 120 bits (289), Expect = 4e-28
Identities = 61/99 (61%), Positives = 71/99 (71%)
Frame = -2
Query: 383 NXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAAL 204
N STE+DL++K+ITPMGGFP YG VN +G G K +ITLRKSL T R A
Sbjct: 250 NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAH 309
Query: 203 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 87
EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 310 EKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 120 bits (289), Expect = 4e-28
Identities = 61/99 (61%), Positives = 71/99 (71%)
Frame = -2
Query: 383 NXASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAAL 204
N STE+DL++K+ITPMGGFP YG VN +G G K +ITLRKSL T R A
Sbjct: 298 NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAH 357
Query: 203 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 87
EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 358 EKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z47808-8|CAA87777.2| 1087|Caenorhabditis elegans Hypothetical
protein D2013.8a protein.
Length = 1087
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 3 FFALSNVYFHGRHLRLRSSRWGCGSRSFF--ANTILLE---CTH 119
F + VY+ R +++ +SRWG S F A+T+L+ C H
Sbjct: 280 FVCMIYVYYSSRKIQMVASRWGLAFASSFTVASTLLMTTGICAH 323
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 190 SNSLTPRPSSVMVDSRRRLTRLHSWVHS 107
+NSLT PSS +V+ R LT L+ ++S
Sbjct: 195 TNSLTSIPSSALVNQRNTLTNLNLGLNS 222
>AF038615-7|AAB94147.1| 479|Caenorhabditis elegans Hypothetical
protein R02D3.7 protein.
Length = 479
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = -1
Query: 195 QPQIH*HLVQVRSWSIPDAG*QGCIHGYTQEGSYSRRSCGYHNPSGCCAALSVVRENKHL 16
Q I+ H+ Q+ +W+ D Q I E S + CC + R KHL
Sbjct: 27 QKNIYRHMTQIHNWTTEDC--QELIAAIKSEKKSRASSTSFV----CCHCRMIFRSVKHL 80
Query: 15 TMQKK 1
KK
Sbjct: 81 VQHKK 85
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,215,438
Number of Sequences: 27780
Number of extensions: 142871
Number of successful extensions: 363
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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