Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0736.Seq
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.0  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    20   9.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    20   9.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   9.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    20   9.1  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 397 AKLLTTMHLLSMTCLRNPLHQWE 329
           AKLL+ + LL ++ L   + QWE
Sbjct: 211 AKLLSLVRLLRLSRLVRYVSQWE 233


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 397 AKLLTTMHLLSMTCLRNPLHQWE 329
           AKLL+ + LL ++ L   + QWE
Sbjct: 211 AKLLSLVRLLRLSRLVRYVSQWE 233


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 397 AKLLTTMHLLSMTCLRNPLHQWE 329
           AKLL+ + LL ++ L   + QWE
Sbjct: 211 AKLLSLVRLLRLSRLVRYVSQWE 233


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 120 HGYTQEGSYSRRSC 79
           HG T   S++R SC
Sbjct: 76  HGLTNTASHTRLSC 89


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 120 HGYTQEGSYSRRSC 79
           HG T   S++R SC
Sbjct: 81  HGLTNTASHTRLSC 94


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 3   FFALSNVYFHGRHLRLRSSRW 65
           FFA  N  F+ R + +   RW
Sbjct: 309 FFANKNQKFYERGIMMLPERW 329


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 120 HGYTQEGSYSRRSC 79
           HG T   S++R SC
Sbjct: 81  HGLTNTASHTRLSC 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,844
Number of Sequences: 438
Number of extensions: 1631
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)