Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0736.Seq
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   101   1e-22
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   101   1e-22
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...    98   2e-21
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    28   2.6  
At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger) fa...    27   6.1  
At5g43690.1 68418.m05340 sulfotransferase family protein similar...    26   8.0  
At2g40660.1 68415.m05017 tRNA-binding region domain-containing p...    26   8.0  

>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  101 bits (243), Expect = 1e-22
 Identities = 50/92 (54%), Positives = 60/92 (65%)
 Frame = -2

Query: 377 ASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAALEK 198
           A TEYD +EK +TPMGGFPHYG V       +G   G  K ++TLR+SL   T R ALE+
Sbjct: 298 AMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEE 357

Query: 197 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 102
           I LKFIDT+S FGHGRFQT  +K  F   + K
Sbjct: 358 IKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  101 bits (243), Expect = 1e-22
 Identities = 50/92 (54%), Positives = 60/92 (65%)
 Frame = -2

Query: 377 ASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAALEK 198
           A TEYD +EK +TPMGGFPHYG V       +G   G  K ++TLR+SL   T R ALE+
Sbjct: 298 AMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEE 357

Query: 197 INLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 102
           I LKFIDT+S FGHGRFQT  +K  F   + K
Sbjct: 358 IKLKFIDTASIFGHGRFQTSLEKMRFYNRVTK 389


>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 50/92 (54%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
 Frame = -2

Query: 377 ASTEYDLSEKSITPMGGFPHYGEVNXXLCDDQGLXHGT*KAIITLRKSLRVHTXRAALEK 198
           A TEYD +EK ITPMGGFPHYG V       +G   G  K ++TLR++L   T R A+E+
Sbjct: 298 AMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEE 357

Query: 197 INLKFIDTSSKFGHGRFQTPADKAAFMG-TLK 105
           I LKFID +S  GHGRFQT  +KA F G T+K
Sbjct: 358 IKLKFIDAASNGGHGRFQTSQEKAKFYGRTIK 389


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 196 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 101
           S+S+S +P PSS+   SR   T L S  H+RR
Sbjct: 17  SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48


>At3g45510.1 68416.m04914 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 257

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 394 KLLTTMHLLSMTCLRNPLHQWEV 326
           K  TT+ L  + C+RNP+  W +
Sbjct: 209 KATTTVWLYVLLCMRNPMEAWRL 231


>At5g43690.1 68418.m05340 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 331

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -2

Query: 362 DLSEKSITPMGGFPHYGEVNXXLCDDQG--LXHGT*KAIITLRKSLR 228
           +LSE++ T +   P Y + +  LC  QG    H T +A+I  +++ +
Sbjct: 15  NLSEETKTLISSLPTYQDSHVKLCKYQGCWYYHNTLQAVINYQRNFQ 61


>At2g40660.1 68415.m05017 tRNA-binding region domain-containing
           protein similar to SP|Q12904 Multisynthetase complex
           auxiliary component p43 [Contains: Endothelial-monocyte
           activating polypeptide II (EMAP-II) (Small inducible
           cytokine subfamily E member 1)] {Homo sapiens}; contains
           Pfam profile PF01588: Putative tRNA binding domain
          Length = 389

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 212 AALEKINLKFIDTSSKFGHGRFQTPADKAAF 120
           +ALEK+NL+    S   G+G   + AD A F
Sbjct: 74  SALEKLNLELATKSVLLGNGLTPSAADVAVF 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,794,316
Number of Sequences: 28952
Number of extensions: 135061
Number of successful extensions: 329
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)