Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0735.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    25   0.37 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    25   0.48 
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   2.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   4.5  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   4.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   4.5  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   6.0  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 471 YFFVFRELVFQILPTSTSFFLISPAFSLA 557
           +F + R   F IL T+TS+F+I   F+++
Sbjct: 282 FFEIDRGTFFGILSTTTSYFIIMIQFNMS 310


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 443 LTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 351
           L +EKE  K   D    EE+  E  ED D D
Sbjct: 213 LVVEKEREKELSDDEAEEEKKEEEGEDKDKD 243


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 189 SHIRLRLLFFHLSLISFARH*YVLAN 266
           S+I + + FFHLS + +    Y+L N
Sbjct: 270 SYIVMYVFFFHLSDVRYVMVVYLLKN 295


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 337 KVPNTKNTVKRKSMKNVGPTT 275
           K+PNTKN  ++ +   V  TT
Sbjct: 293 KLPNTKNVRRKTNPAGVTTTT 313


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 219 ERKEVEGEYEKDYE 178
           E+ + EGEY K YE
Sbjct: 106 EKYDKEGEYRKKYE 119


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 337 KVPNTKNTVKRKSMKNVGPTT 275
           K+PNTKN  ++ +   V  TT
Sbjct: 293 KLPNTKNVRRKTNPAGVTTTT 313


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 513 TSTSFFLISPAFSLAASNL 569
           TS+S  ++SPA SLA++++
Sbjct: 19  TSSSALVMSPANSLASTDI 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,150
Number of Sequences: 336
Number of extensions: 1529
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)