Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0735.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949 31 0.70
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665... 30 1.6
07_03_0631 + 20104332-20106802,20106904-20107030,20107352-201074... 30 1.6
02_04_0461 - 23125260-23125868 29 2.1
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 29 3.7
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 29 3.7
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 29 3.7
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 28 4.9
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 28 4.9
09_06_0101 - 20864151-20864464,20864616-20864805,20865149-208653... 28 4.9
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 28 4.9
03_06_0713 - 35687672-35689219 28 6.5
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 27 8.6
>02_03_0110 - 15350939-15352162,15352591-15353310,15353776-15353949
Length = 705
Score = 31.1 bits (67), Expect = 0.70
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = -3
Query: 287 RTHDKFSI-GKNVLVPSERNQREVKEKKSKANMRKTTKGKRTTADP---PNIQREKERVW 120
R+H S GKNV+V R +K K + + K KGK+ P P ++ E+ +
Sbjct: 338 RSHQTESAEGKNVVVNDSVPPRMIKPKNPEVGVWKVNKGKKPVLKPRPRPTFKQLLEK-Y 396
Query: 119 KNQKKGTASSRLSPSR 72
+QK SRL ++
Sbjct: 397 TSQKNTNVFSRLGGAK 412
>11_04_0071 - 13165019-13165082,13165345-13165428,13166325-13166524,
13166756-13170655
Length = 1415
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 123 NSLFLSL-NIRRIRRCSLSFRSLSHIRLRLLFFHLSLISFARH*YVLANGELVVG 284
N F+SL N IR CS++ + LSH+ L+L F H I L G+++ G
Sbjct: 1034 NFSFMSLLNKLVIRACSITGKQLSHLILQLPFLHYLTIGKCPKITSLLLGDVING 1088
>07_03_0631 +
20104332-20106802,20106904-20107030,20107352-20107479,
20108771-20109083
Length = 1012
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +2
Query: 236 VRSALIRSCQWRTCRGSYVLHTFPLHRIFRIRNLCCMSRRCRYPPGVQIRVLHIHY-DRN 412
VRS L Q T + + P+ R+ +L C+ + PP V H+ Y D +
Sbjct: 525 VRSILFFDGQRTTMLNTALNSILPVSSSLRVLDLSCIETKMERPPDVISTCSHLRYLDLS 584
Query: 413 QTCILLFLKSILRL 454
T I +F S +L
Sbjct: 585 FTGITMFPDSFCKL 598
>02_04_0461 - 23125260-23125868
Length = 202
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -3
Query: 242 SERNQREVKEKKSKAN-MRKTTKGKRTTADPPNIQREKERVWKNQKK 105
++R QRE +EK+ K N +R TK +R T +P IQ+ + + Q K
Sbjct: 132 AKRKQREEREKRKKENVLRSGTKLQRVT-NPKTIQKIAKSKKRKQLK 177
>10_06_0102 +
10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 270 LHWQERISAERTKSKRGERKEVEGEYEKDYE 178
L WQE +S T+ + R E++G+Y K+YE
Sbjct: 826 LQWQELMSVLATRLPKDLRNELDGKY-KEYE 855
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 533 QKETSGCRQDLKDELTEDXXXXXXXXKDEGLTLEKEGYKSDYDRNEYEE 387
+KE D ++E E+ +DEG + EG SD + N EE
Sbjct: 161 EKEEEAAETDGEEEAEEEAAETAGENEDEGAESDPEGEASDAEENASEE 209
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 437 LEKEGYKSDYDRNEYEERGSEHQEDND 357
+E + YKSD D N YE+ E+ +D+D
Sbjct: 676 IEGQDYKSD-DENAYEDDDEEYDDDDD 701
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 245 PSERNQREVKEKKSKANMRKTTKGKRTTADPPNI 144
PS+ E +KK K + K KG DPP+I
Sbjct: 164 PSQDGGSEAAKKKKKKSKSKKKKGPLQQTDPPSI 197
>12_02_0792 - 23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -3
Query: 206 SKANMRKTTKGKR---TTADPPNIQREKERVWKNQKKG 102
SKA+ RK KG+ +T+D PN + K+ V Q+KG
Sbjct: 887 SKADRRKLKKGQNVGDSTSDSPNGEAAKKPVNSQQEKG 924
>09_06_0101 -
20864151-20864464,20864616-20864805,20865149-20865310,
20866073-20866186
Length = 259
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Frame = -3
Query: 581 QCWRQIR---SS*RKSWRNQKETSGCRQDLKDELTEDXXXXXXXXKDEGLTLEKEGYKSD 411
Q W IR S +K W+N ETSG DL + D + L G K D
Sbjct: 101 QYWNNIRCPSKSGQKGWKNAWETSGVCSDLTESAYFDTALALRDKINPLSRLVSNGIKPD 160
Query: 410 Y 408
+
Sbjct: 161 F 161
>05_03_0359 - 12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 270 LHWQERISAERTKSKRGERKEVEGEYEK 187
L W+E +S T+ R + E+EG+YE+
Sbjct: 1000 LQWEELMSVLATRLPRNLKSELEGKYEE 1027
>03_06_0713 - 35687672-35689219
Length = 515
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 293 LHTFPLHRIFRIRNLCCMSRRCRYPPGVQIRVLHIH 400
LH P + R+R L +S RY P + R+LH+H
Sbjct: 83 LHPSPRRNLARLRRLLSVSLLRRY-PALARRLLHLH 117
>10_01_0030 -
386008-388056,388166-388360,388931-389062,389167-389538,
389753-389894,392274-392533,392737-393015,394796-394939
Length = 1190
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -3
Query: 254 VLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKK--GTASSRLS 81
+L E+ +RE +E++ + ++ K R ++EKE++ K GT+SS LS
Sbjct: 511 LLEEEEKEKREEEERRERRRTKEREKKLRRKERLKEKEKEKEKIPVQLKPYIGTSSSPLS 570
Query: 80 PS 75
S
Sbjct: 571 NS 572
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,195,131
Number of Sequences: 37544
Number of extensions: 159358
Number of successful extensions: 803
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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