Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0735.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 33 0.13
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10) 31 0.53
SB_32504| Best HMM Match : TolA (HMM E-Value=0.52) 31 0.71
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 29 2.2
SB_38330| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_19628| Best HMM Match : DUF1542 (HMM E-Value=8.3) 29 2.9
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38) 29 3.8
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14) 28 5.0
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 28 5.0
SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066) 28 6.6
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 28 6.6
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002) 28 6.6
SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13) 28 6.6
SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16) 28 6.6
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1) 27 8.7
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_45970| Best HMM Match : rve (HMM E-Value=1.7e-11) 27 8.7
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89) 27 8.7
SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -3
Query: 248 VPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQRE--KERVWKNQKKGTASSRLSPS 75
+P+E+ ++E +EKK + +KT + + +P N +++ RV + Q + R +P
Sbjct: 692 LPTEKKKKEKREKKERKREKKTRRARTPVEEPENFEKDVPLPRVHEEQDQVEKEHRRTPD 751
Query: 74 RWVNP 60
P
Sbjct: 752 GTQEP 756
>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 32.7 bits (71), Expect = 0.23
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = -3
Query: 233 NQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPS 75
N+ + K KK K +M+K +K ++ T DPP + R K R + G+ +S S
Sbjct: 1089 NKSKKKSKKDKKSMKKASKHRKETGDPPML-RAKIRGIGSPVSGSFQRTISES 1140
>SB_23704| Best HMM Match : Utp14 (HMM E-Value=2.1e-10)
Length = 574
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = -3
Query: 215 EKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPS 75
+K +K +KT+K ++ PN +R++++ K +KK ASS++ P+
Sbjct: 367 KKGTKRGKKKTSKDATEESEAPNKKRKEKK--KKKKKKKASSKIEPT 411
>SB_32504| Best HMM Match : TolA (HMM E-Value=0.52)
Length = 422
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -3
Query: 242 SERNQREVKEKKSKANMRKTTKGK-RTTADPPNIQREKERVWKNQKK 105
S++ +E K++K K M+K K K +T + ++EKE+ K +K+
Sbjct: 129 SDKELKEEKKEKEKERMKKEEKHKEKTRKEEKEREKEKEKTKKEEKE 175
>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 30.7 bits (66), Expect = 0.93
Identities = 23/110 (20%), Positives = 47/110 (42%)
Frame = -3
Query: 434 EKEGYKSDYDRNEYEERGSEHQEDNDSDXXXXXXXXXXXXXXXXXXXERRTHDKFSIGKN 255
E+E + + +R E EER E +E + +++ ++ K
Sbjct: 443 EEERRREEEERREEEERKREEEERKQREEEEKKREEEERKQREEEERKQKEKEEEKKRKE 502
Query: 254 VLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKK 105
ER +E +EKK++ + + +G+R ++E+ER + +KK
Sbjct: 503 ----EERKHKEEEEKKTEESYDDSWRGRRARRKAEEERKERERRERLEKK 548
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -3
Query: 248 VPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTA 96
V E+ E KEK A R + +GK+ Q +K K +KK A
Sbjct: 926 VADEQPAEEAKEKSKPAGRRASRRGKKQATQVEESQEDKTDAEKEKKKPKA 976
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = -3
Query: 236 RNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSR 87
RN + KE+ R ++ +R+ ++ P++++ + K+Q+K + SR
Sbjct: 248 RNSQRHKERSRYHRSRSRSRHRRSRSNSPSMRKSDRKFKKSQRKSRSRSR 297
>SB_38330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = -3
Query: 512 RQDLKDELTEDXXXXXXXXKDEGLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 351
R++ ++E+ E+ ++E E+E + + + E EE E +ED+D D
Sbjct: 128 REEEEEEVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDDDDD 181
>SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Frame = -3
Query: 242 SERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQK---KGTASSRLSPSR 72
+ER + E + + N RKT G+ + ++ + +R WKN+K + T R+ +
Sbjct: 65 TERQRMEGQSDREWKN-RKTENGR---TERQRMEGQSDREWKNRKTETRRTERQRMEEQK 120
Query: 71 ---WVN-PA*RSRIIQNRIPTRKSRNW 3
W N R ++ R+ +K R W
Sbjct: 121 DREWKNRKTENGRTVRQRMEEQKDREW 147
>SB_19628| Best HMM Match : DUF1542 (HMM E-Value=8.3)
Length = 104
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = -3
Query: 290 RRTHDKFSIG--KNVLVPSERNQREVKEKKSKANMRKTTKG--KRTTADPPNIQREKERV 123
+++ D+F G K + ++ ++V + K+N+RK K +++ P + R ++R
Sbjct: 29 KKSWDQFKEGPIKRLGATTKNMAKKVALDQPKSNIRKIVKKILEQSKRWPESSGRNQKRS 88
Query: 122 WKNQKKG 102
W NQK G
Sbjct: 89 WSNQKDG 95
>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
Length = 1215
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = -3
Query: 266 IGKNVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSR 87
+ N ++ S+ + R++ + N++ + PN +E V+K+ KG SS
Sbjct: 969 VAVNNVLTSQNHARDMLNNNN-INLKNADNASLLRSLSPNGTIGQEPVFKSSSKGDLSSE 1027
Query: 86 LSPS 75
LSPS
Sbjct: 1028 LSPS 1031
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = -3
Query: 242 SERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWVN 63
S++ +E+K+K + + + + T+ P K+ + K +SSR+ S+ V+
Sbjct: 1854 SDKRDKEIKDKSHFMSSSEVSDEEMTSIGRPESITTKKSLSSTDKNTNSSSRIDMSQLVD 1913
Query: 62 P 60
P
Sbjct: 1914 P 1914
>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
Length = 1104
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 278 DKFSIGKNVLVPSERNQREVKEKKSKANMRKTTKGKRTT 162
DKF + V + E+ +++VKEKK KA + T + K T
Sbjct: 162 DKFDPDEEVKLLEEKEKQQVKEKKEKARI-NTREAKLPT 199
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -3
Query: 242 SERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRWVN 63
+ + +R KEK SK + +GK T PP++ ++ + Q T +S PS
Sbjct: 3169 ASKRKRNTKEKNSKLPLPSVPEGKILTDIPPSLPSTASQIGE-QVVNTRTSSNEPSLPEA 3227
Query: 62 PA 57
PA
Sbjct: 3228 PA 3229
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 248 VPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKN 114
+ E ++E KEK+ + +K+ K K A P + K+ W N
Sbjct: 269 IREEWEEQERKEKERQERKQKSIKEKEVIAWPWKVGHSKDEPWHN 313
>SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066)
Length = 716
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 281 HDKFSIGKNVLVPSERNQREVKEKKSKANMRK--TTKGKRTTADPPNI 144
+D F ++ +P E + +K+ S NMRK T G + T+D +
Sbjct: 104 YDLFQTYHDLFIPKEEREDLLKQGISSENMRKLRTNAGDKVTSDAKEV 151
>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1331
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -3
Query: 230 QREVKEKKSKANMRKTTKGK--RTTADPPNIQREKERVWKNQKKGTASSRLSPSRWVNPA 57
QR K + + NMR+ + G ++ AD P QR ++ K+ +KG +++ + V PA
Sbjct: 247 QRAPKRRNWRKNMRRPSSGSIGQSMADSP--QRGTPQLSKSDRKGEKTAKGKEIKRVIPA 304
Query: 56 *RSR 45
S+
Sbjct: 305 GESK 308
>SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1359
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 281 HDKFSIGKNVLVPSERNQREVKEKKSKANMRK--TTKGKRTTADPPNI 144
+D F ++ +P E + +K+ S NMRK T G + T+D +
Sbjct: 1109 YDLFQTYHDLFIPKEEREDLLKQGISSENMRKLRTNAGDKVTSDAKEV 1156
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = -3
Query: 509 QDLKDELTEDXXXXXXXXKDEGLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 351
+D DE E +T +KE K + E EE E QE+ D D
Sbjct: 734 EDDDDEEEESEEDESNKPSSRQVTAKKEDKKGKKKKKEEEEEEEEDQEEEDED 786
>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
Length = 1725
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 281 HDKFSIGKNVLVPSERNQREVKEKKSKANMRK--TTKGKRTTADPPNI 144
+D F ++ +P E + +K+ S NMRK T G + T+D +
Sbjct: 1180 YDLFQTYHDLFIPKEEREDLLKQGISSENMRKLRTNAGDKVTSDAKEV 1227
>SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)
Length = 752
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -3
Query: 275 KFSIGKNVLVPSERNQREV--KEKKSKANMRKTTKGKRTTADPPNIQREKERVW--KNQK 108
KF K E ++RE KEK K + + TT DPP + K + W K+ K
Sbjct: 356 KFRRSKKASATEENDEREQENKEKNKVEEEEKKSDNEETTPDPPKSRFGKFK-WARKDDK 414
Query: 107 KGTASS 90
K S
Sbjct: 415 KDEGDS 420
>SB_47687| Best HMM Match : SCP (HMM E-Value=1.8e-16)
Length = 600
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 278 DKFSIGKNVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPN-IQREKERVWKNQKKG 102
DK K+ E+N + +K AN +KG T P + ++E+E+ K+ K+G
Sbjct: 2 DKGGDSKDTPKSPEQNNSSQQTEKELANGHNMSKGDETKEKPSHRAEKEQEKDNKSSKEG 61
>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
Length = 566
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 245 PSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQRE-KERVWKNQKKGTASSR 87
P E+N++E ++ ++ RKT+K K + + Q E K+ K Q + +SR
Sbjct: 260 PQEKNKQEQDKQAARQASRKTSKTKTSKPQEKDKQDEDKQAARKRQVRTRQASR 313
>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 239 ERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERV 123
++ +E KEK+ + K K K+ + +QR+KER+
Sbjct: 353 KQKHQEKKEKERQREKEKLEKEKQKELERKELQRQKERM 391
>SB_45970| Best HMM Match : rve (HMM E-Value=1.7e-11)
Length = 717
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 252 ISAERTKSKRGERKEVEGEYEKDYER 175
+ R + +R +R+E EG+Y +DY R
Sbjct: 350 VEKRRKRRQRKQRQEGEGDYGEDYNR 375
>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 248 VPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKK 105
VP R RE EKK K +K K K+ ++ K+ KN+KK
Sbjct: 7 VPMRREYRE--EKKRKKKKQKKKKKKKKKKKKKKNKKNKKNKNKNKKK 52
>SB_22169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/91 (20%), Positives = 41/91 (45%)
Frame = -3
Query: 290 RRTHDKFSIGKNVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQ 111
R D F++GK +++ +++ + + + ++ K +K K+ + P + E + W
Sbjct: 119 RAADDSFTVGK-LIMQQSKSKEHIPKSDASSSSCKESKSKKDSKSSPTHKAEPKLDWLPI 177
Query: 110 KKGTASSRLSPSRWVNPA*RSRIIQNRIPTR 18
+ T + P+ A RI R+P R
Sbjct: 178 TRNTIA---YPAYVQTMAGFDRISHARLPDR 205
>SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)
Length = 589
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = -3
Query: 248 VPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSRW 69
VP RN+ E ++S KTT + A+ + E++ V N K+ S ++ R
Sbjct: 522 VPRSRNKEETLNQQSYKFSYKTTPQESILANGSAERMEEKSVAHNPKRAQGSEEIATVRT 581
Query: 68 VNP 60
P
Sbjct: 582 PKP 584
>SB_11401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 439
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 398 EYEERGSEHQEDNDSD 351
EYEER EH+ED D
Sbjct: 271 EYEERNDEHEEDRHED 286
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,008,487
Number of Sequences: 59808
Number of extensions: 196270
Number of successful extensions: 1182
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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