Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0735.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr... 37 0.013
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 32 0.27
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 32 0.27
AC024838-6|AAF60823.1| 214|Caenorhabditis elegans Hypothetical ... 31 0.82
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 30 1.4
AL132949-23|CAB70113.2| 152|Caenorhabditis elegans Hypothetical... 30 1.4
AL132949-6|CAB70102.1| 152|Caenorhabditis elegans Hypothetical ... 30 1.4
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ... 30 1.4
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ... 30 1.4
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ... 30 1.4
Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z32683-4|CAA83629.1| 443|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical p... 29 3.3
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot... 29 3.3
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot... 29 3.3
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 3.3
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 3.3
Z82072-1|CAB04920.2| 467|Caenorhabditis elegans Hypothetical pr... 28 4.4
AL032636-6|CAB54421.1| 467|Caenorhabditis elegans Hypothetical ... 28 4.4
AF036706-12|AAK39280.1| 343|Caenorhabditis elegans Hypothetical... 28 4.4
Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 28 5.8
U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical pr... 28 5.8
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 28 5.8
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 28 5.8
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 28 5.8
AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical ... 28 5.8
AF038614-2|AAB92061.2| 321|Caenorhabditis elegans Serpentine re... 28 5.8
Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical p... 27 7.7
Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical pr... 27 7.7
>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
protein T26A5.5a protein.
Length = 1076
Score = 36.7 bits (81), Expect = 0.013
Identities = 30/126 (23%), Positives = 52/126 (41%)
Frame = -3
Query: 500 KDELTEDXXXXXXXXKDEGLTLEKEGYKSDYDRNEYEERGSEHQEDNDSDXXXXXXXXXX 321
KDE+ ED ++E E G + D + EY+ E QE+ + D
Sbjct: 584 KDEIKEDINGFEEEFEEE---YEGIGQRDDQEEEEYDAEEPEDQEEEEED--EYQAEEYT 638
Query: 320 XXXXXXXXXERRTHDKFSIGKNVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQ 141
RR+ K + V V +++++E EK K R+ +K K+ +
Sbjct: 639 PTPVTRRSSSRRSGAKNDESEEVSV--KKDKKEKMEKVEKDEKRRNSKSKKDKISKEKKK 696
Query: 140 REKERV 123
+E+ER+
Sbjct: 697 KERERI 702
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 32.3 bits (70), Expect = 0.27
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -3
Query: 242 SERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPS 75
SE ++ E K KKSK N K+ K + T++ + E E+ K KKG S S
Sbjct: 156 SEESEEERKVKKSKKNKEKSVKKRAETSEESD---EDEKPSKKSKKGLKKKAKSES 208
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 239 ERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASS 90
+ + E +E+KSK +KT K+ T+ + + E+ER K KK S
Sbjct: 129 DEDSDEEREQKSKKKSKKT---KKQTSSESSEESEEERKVKKSKKNKEKS 175
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 32.3 bits (70), Expect = 0.27
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -3
Query: 242 SERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPS 75
SE ++ E K KKSK N K+ K + T++ + E E+ K KKG S S
Sbjct: 156 SEESEEERKVKKSKKNKEKSVKKRAETSEESD---EDEKPSKKSKKGLKKKAKSES 208
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 239 ERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASS 90
+ + E +E+KSK +KT K+ T+ + + E+ER K KK S
Sbjct: 129 DEDSDEEREQKSKKKSKKT---KKQTSSESSEESEEERKVKKSKKNKEKS 175
>AC024838-6|AAF60823.1| 214|Caenorhabditis elegans Hypothetical
protein Y59E9AL.6 protein.
Length = 214
Score = 30.7 bits (66), Expect = 0.82
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = -3
Query: 539 RNQKETSGCRQDLKDELTEDXXXXXXXXKDEGLTLEKEGYKSDYDRNEYEERGSEHQEDN 360
+N+K+ + + KDE +D KD+ EK+ K D +++ +E+ E ++D
Sbjct: 87 KNEKKEGDEKDEKKDEEKKDGDDKKDEKKDDDKKDEKKSDKKDEKKDDKKEKDEEKKDDK 146
Query: 359 DSD 351
D
Sbjct: 147 KED 149
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 248 VPSERNQREVKEKKSKANMRKTTKGKRTTAD-PPN 147
VPS+R + E KEK+ K R+ +GK+ D PN
Sbjct: 520 VPSKRRKGEPKEKREKKEKREKKEGKKGKKDKDPN 554
>AL132949-23|CAB70113.2| 152|Caenorhabditis elegans Hypothetical
protein Y53F4B.26 protein.
Length = 152
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = -3
Query: 290 RRTHDK-FSIGKNVLVPSERNQREV-KEKKSKANM---RKTTKGKRTTADPPNIQREKER 126
RRT + S N + ER RE +E +S+ M RK K + + + K+R
Sbjct: 45 RRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMDWERKKEKRASMSEEEKAEMKYKKR 104
Query: 125 VWKNQKKGTASSRLSPSRWVNP 60
VW +K+ + S NP
Sbjct: 105 VWMKKKRNEVAKTHDTSSVANP 126
>AL132949-6|CAB70102.1| 152|Caenorhabditis elegans Hypothetical
protein Y53F4B.7 protein.
Length = 152
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = -3
Query: 290 RRTHDK-FSIGKNVLVPSERNQREV-KEKKSKANM---RKTTKGKRTTADPPNIQREKER 126
RRT + S N + ER RE +E +S+ M RK K + + + K+R
Sbjct: 45 RRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMDWERKKEKRASMSEEEKAEMKYKKR 104
Query: 125 VWKNQKKGTASSRLSPSRWVNP 60
VW +K+ + S NP
Sbjct: 105 VWMKKKRNEVAKTHDTSSVANP 126
>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
protein ZK250.9 protein.
Length = 1466
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = -3
Query: 290 RRTHDK-FSIGKNVLVPSERNQREV-KEKKSKANM---RKTTKGKRTTADPPNIQREKER 126
RRT + S N + ER RE +E +S+ M RK K + + + K+R
Sbjct: 45 RRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMDWERKKEKRASMSEEEKAEMKYKKR 104
Query: 125 VWKNQKKGTASSRLSPSRWVNP 60
VW +K+ + S NP
Sbjct: 105 VWMKKKRNEVAKTHDTSSVANP 126
>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
protein Y16E11A.2 protein.
Length = 1466
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = -3
Query: 290 RRTHDK-FSIGKNVLVPSERNQREV-KEKKSKANM---RKTTKGKRTTADPPNIQREKER 126
RRT + S N + ER RE +E +S+ M RK K + + + K+R
Sbjct: 45 RRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMDWERKKEKRASMSEEEKAEMKYKKR 104
Query: 125 VWKNQKKGTASSRLSPSRWVNP 60
VW +K+ + S NP
Sbjct: 105 VWMKKKRNEVAKTHDTSSVANP 126
>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
protein F59H6.5 protein.
Length = 1486
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = -3
Query: 290 RRTHDK-FSIGKNVLVPSERNQREV-KEKKSKANM---RKTTKGKRTTADPPNIQREKER 126
RRT + S N + ER RE +E +S+ M RK K + + + K+R
Sbjct: 45 RRTRSRTLSDNSNAVWKRERRSRETSQESESRLRMDWERKKEKRASMSEEEKAEMKYKKR 104
Query: 125 VWKNQKKGTASSRLSPSRWVNP 60
VW +K+ + S NP
Sbjct: 105 VWMKKKRNEVAKTHDTSSVANP 126
>Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical
protein T01E8.5 protein.
Length = 1270
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = -3
Query: 245 PSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQ-----REKERVWKNQKKGTASSRLS 81
P E +Q+ K+S +N R ++ D N + REK+R K +++ +SSR S
Sbjct: 129 PPETSQQSTSRKRSASNSRSPSRSHSRRYDRDNGRQRSRSREKKRRKKERRRKRSSSRSS 188
Query: 80 PS 75
S
Sbjct: 189 SS 190
>Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical
protein T01E8.5 protein.
Length = 1270
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = -3
Query: 245 PSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQ-----REKERVWKNQKKGTASSRLS 81
P E +Q+ K+S +N R ++ D N + REK+R K +++ +SSR S
Sbjct: 129 PPETSQQSTSRKRSASNSRSPSRSHSRRYDRDNGRQRSRSREKKRRKKERRRKRSSSRSS 188
Query: 80 PS 75
S
Sbjct: 189 SS 190
>Z32683-4|CAA83629.1| 443|Caenorhabditis elegans Hypothetical
protein R07E5.6 protein.
Length = 443
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3
Query: 230 QREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQK 108
+R+ KEK K M T K K+ D ++EKER+ K +K
Sbjct: 235 ERKEKEKVEKNKMEMTEKIKKKDEDE-KAKKEKERIDKEEK 274
>Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical
protein K10C8.3b protein.
Length = 141
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = -3
Query: 251 LVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPSR 72
L SE ++++ K K ++ ++ +R+ PN ++EK R + G++S + +
Sbjct: 10 LSASESSRKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVR----NRSGSSSKKEKKNS 65
Query: 71 WVNP 60
VNP
Sbjct: 66 LVNP 69
>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
protein.
Length = 2693
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 281 HDKFSIGKNVLVPSERNQREVKEKKSKANMRKTTKGKRTTADP 153
++K I +N V S +EVKEKK K + K +GK+ P
Sbjct: 1273 NEKGKIRQNTEV-SVTKSKEVKEKKEKKKVEKKDEGKKKPGRP 1314
>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
protein.
Length = 2708
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 281 HDKFSIGKNVLVPSERNQREVKEKKSKANMRKTTKGKRTTADP 153
++K I +N V S +EVKEKK K + K +GK+ P
Sbjct: 1288 NEKGKIRQNTEV-SVTKSKEVKEKKEKKKVEKKDEGKKKPGRP 1329
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 281 HDKFSIGKNVLVPSERNQREVKEKKSKANMRKTTKGKRTTADP 153
++K I +N V S +EVKEKK K + K +GK+ P
Sbjct: 17099 NEKGKIRQNTEV-SVTKSKEVKEKKEKKKVEKKDEGKKKPGRP 17140
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 281 HDKFSIGKNVLVPSERNQREVKEKKSKANMRKTTKGKRTTADP 153
++K I +N V S +EVKEKK K + K +GK+ P
Sbjct: 17114 NEKGKIRQNTEV-SVTKSKEVKEKKEKKKVEKKDEGKKKPGRP 17155
>Z82072-1|CAB04920.2| 467|Caenorhabditis elegans Hypothetical
protein W05H12.1 protein.
Length = 467
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 260 KNVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKE 129
K V + NQ+ VKE+ RKT + + A+ ++ EKE
Sbjct: 354 KEEKVKGKSNQKTVKERIRAEEARKTVEKEEEEAEEEAVEEEKE 397
>AL032636-6|CAB54421.1| 467|Caenorhabditis elegans Hypothetical
protein W05H12.1 protein.
Length = 467
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 260 KNVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKE 129
K V + NQ+ VKE+ RKT + + A+ ++ EKE
Sbjct: 354 KEEKVKGKSNQKTVKERIRAEEARKTVEKEEEEAEEEAVEEEKE 397
>AF036706-12|AAK39280.1| 343|Caenorhabditis elegans Hypothetical
protein T07A9.8 protein.
Length = 343
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/66 (19%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -3
Query: 266 IGKNVLVPSERNQREVK-EKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASS 90
+GK + E++ + V EK+ K ++ T+ + +++K+R W+N+ + A+
Sbjct: 1 MGKKRKITDEKDAQHVPAEKREKVENWLKKSTEKPTSSQSDAEKKKKRPWRNKVRKLAAK 60
Query: 89 RLSPSR 72
+ + +
Sbjct: 61 KAAADK 66
>Z70204-3|CAA94113.1| 385|Caenorhabditis elegans Hypothetical
protein C11G6.3 protein.
Length = 385
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/52 (25%), Positives = 29/52 (55%)
Frame = -3
Query: 260 KNVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKK 105
K +L ER++R+ KE++ + K+ + +R ++E+E+ + QK+
Sbjct: 204 KELLKEKERSERKEKERELEREKEKSREKEREKEREKEREKEREKEREKQKE 255
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 266 IGKNVLVPSERNQREVKEKKSKANMRKTTKGKRTTAD-PPNIQREKERVWK 117
+ K+ P+ N+++ K+ K K+ K T+ +A PP +++ E+V K
Sbjct: 365 VEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEK 415
>U41510-8|AAK39385.1| 493|Caenorhabditis elegans Hypothetical
protein ZC449.5 protein.
Length = 493
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = -3
Query: 242 SERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKERVWKNQKKGTASSRLSPS 75
SE VK K K+ KTT +TT +P + ++ +++ +++K ++ +P+
Sbjct: 85 SEEETTTVKSHKKKST--KTTDAPKTTEEPASTKKSEKKKTESKKAVKTTTTAAPA 138
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 248 VPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKER 126
+PS N+R KE++ + R+ + ADPP I + ER
Sbjct: 706 LPSYINRRMEKEREREIEYRRDREYSMPPADPPVITEKYER 746
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform a protein.
Length = 1004
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 248 VPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKER 126
+PS N+R KE++ + R+ + ADPP I + ER
Sbjct: 842 LPSYINRRMEKEREREIEYRRDREYSMPPADPPVITEKYER 882
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily assigned
gene nameprotein 204, isoform c protein.
Length = 1099
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 248 VPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREKER 126
+PS N+R KE++ + R+ + ADPP I + ER
Sbjct: 937 LPSYINRRMEKEREREIEYRRDREYSMPPADPPVITEKYER 977
>AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical
protein C35E7.9 protein.
Length = 301
Score = 27.9 bits (59), Expect = 5.8
Identities = 28/128 (21%), Positives = 45/128 (35%)
Frame = -3
Query: 533 QKETSGCRQDLKDELTEDXXXXXXXXKDEGLTLEKEGYKSDYDRNEYEERGSEHQEDNDS 354
+K+ + + KD+ E+ DE +KE K D ++ EE+ E +ED
Sbjct: 74 EKKEKSKKSEKKDDKKEEAKKEDDKK-DEKKDEKKEDKKDDKKDDKKEEKKEEKKEDEKE 132
Query: 353 DXXXXXXXXXXXXXXXXXXXERRTHDKFSIGKNVLVPSERNQREVKEKKSKANMRKTTKG 174
E++ K K E + E KE + K + +K
Sbjct: 133 KGDDKKEDEKDDKKSGSKDAEKKEEKKEEEKKE--EKKEEKKEEKKEDEKKEDEKKEEPK 190
Query: 173 KRTTADPP 150
T DPP
Sbjct: 191 PHITIDPP 198
>AF038614-2|AAB92061.2| 321|Caenorhabditis elegans Serpentine
receptor, class v protein4 protein.
Length = 321
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 108 LLIFPNSLFLSLNIRRIRRCSLSFRSLSHIR 200
L + N++FL + + RCS FR +H++
Sbjct: 96 LTVIKNAMFLGYTVVAVNRCSEIFRFRNHVK 126
>Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical
protein T04A8.13 protein.
Length = 791
Score = 27.5 bits (58), Expect = 7.7
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Frame = -3
Query: 434 EKEGYKSDYDRNEYEERGSEHQED---NDSDXXXXXXXXXXXXXXXXXXXERRTHDKFSI 264
EK+ +++ ++NE E++ E +ED D +++ K
Sbjct: 65 EKDKEEAEKEKNEKEKKEEEKKEDGHEKKEDKKEDKKENENDEKKEKSKDDKKEESKEDK 124
Query: 263 GKNVLVPSERNQREVKEKKSKANMRKTTKGKRTTADPPNIQREK---ERVWKNQKKGTAS 93
+ + E K+K+ K + + K T D ++EK E+V ++ KK S
Sbjct: 125 KEKTKTEDNEGKNEEKKKEKKEEKKDEKEKKEKTEDDKEKEKEKTKEEKVKEDPKKDDKS 184
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -3
Query: 551 RKSWRNQKETSGCRQDLKDELTEDXXXXXXXXKDEGLTLEKEGYKSDYDRNEYEERGSEH 372
+K N ++ + D K+E ED +EG EK+ K + ++E E++ E
Sbjct: 100 KKENENDEKKEKSKDDKKEESKEDKKEKTKTEDNEGKNEEKKKEKKEEKKDEKEKK--EK 157
Query: 371 QEDN 360
ED+
Sbjct: 158 TEDD 161
>Z32683-1|CAA83621.1| 812|Caenorhabditis elegans Hypothetical
protein R07E5.1 protein.
Length = 812
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -3
Query: 446 GLTLEKEGYKSDYDRNEYEERGSEHQEDNDSD 351
G +K D D EY+++ S+ +E+N+++
Sbjct: 600 GAEEKKRNQSDDDDEKEYDDKDSDEEEENEAE 631
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,975,460
Number of Sequences: 27780
Number of extensions: 147142
Number of successful extensions: 991
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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