Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0733.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.2  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.2  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.2  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   5.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.7  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 97  DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 192
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 97  DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 192
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 97  DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 192
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 97  DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 192
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 97  DGEKLKKVITELNGKDVEQLIAAGREKLSSMP 192
           DG +L  V+   +G D+   I  G   L  MP
Sbjct: 152 DGNQLDLVLNSESGGDLSDFITNGEWYLIGMP 183


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 58  DVEKILSSVGIEADGEKLKKVITELNGKDVEQL 156
           DVE++LS   + A GE+   + +    ++V+QL
Sbjct: 329 DVEEMLSHQSMPATGERQTLMFSATFPEEVQQL 361


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -1

Query: 203 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPS 96
           P P    + F R   IS   + P  S  +  S SPS
Sbjct: 172 PSPASDSECFDRRKFISALVNAPSVSPASLPSISPS 207


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 59  SAAAGVVLPPSTASKYA 9
           +AAA  +LPP TA+  A
Sbjct: 131 AAAAAALLPPQTAAMAA 147


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -1

Query: 188  IDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELR----IFSTSAAAGVVLP 33
            +D +      ++ +T++        ++ SPSAS+P ++      F+T+    V LP
Sbjct: 1272 LDSNLKYEFWVTAATTIGEGQPSKKVTVSPSASVPAKIASFDDTFTTTYKEDVTLP 1327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,405
Number of Sequences: 336
Number of extensions: 2155
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)