Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0733.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 94 2e-20
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 91 1e-19
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 89 4e-19
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.0
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.6
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 27 2.6
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 4.5
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 26 6.0
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 6.0
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 7.9
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.9
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 93.9 bits (223), Expect = 2e-20
Identities = 39/67 (58%), Positives = 58/67 (86%)
Frame = +1
Query: 1 YVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKL 180
Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG EKL
Sbjct: 3 YLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKL 62
Query: 181 SSMPVGG 201
+++P GG
Sbjct: 63 ATVPTGG 69
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 91.5 bits (217), Expect = 1e-19
Identities = 39/67 (58%), Positives = 58/67 (86%)
Frame = +1
Query: 1 YVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKL 180
Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG EKL
Sbjct: 3 YLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKL 62
Query: 181 SSMPVGG 201
S++P G
Sbjct: 63 STVPSAG 69
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 89.4 bits (212), Expect = 4e-19
Identities = 37/67 (55%), Positives = 58/67 (86%)
Frame = +1
Query: 1 YVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKL 180
Y+AAYLL +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG EKL
Sbjct: 3 YLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKL 62
Query: 181 SSMPVGG 201
+++P GG
Sbjct: 63 ATVPSGG 69
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -1
Query: 131 SSVITFLSFSPSASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 3
SSV T LS S S+SIP + STS ++ V+P S++S +++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -1
Query: 203 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSP----SASIPTELRIFSTSAAAGVVL 36
PPP SFS I+ ++ +P SS T + SP S+ +P+ + I S S ++ VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245
Query: 35 PPS 27
P S
Sbjct: 246 PTS 248
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 146 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKY 12
+ L + S T +S S S+PT+ + T + + V PPS S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -1
Query: 146 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT 3
T LP ++V T SFS SAS T +++ +V PPST+ T
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 517 FYNVVTGKTLALPNLIALQHIPLSXAGV-IAEEARTDRPSQQL 642
F V+GK L NL L+ PL+ G + E+ +PS+ L
Sbjct: 98 FGKTVSGKVRNLGNLTPLEQTPLASVGKNLEEKEAAAKPSRTL 140
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 161 AISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 18
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -1
Query: 179 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTA 21
SF P+A + S P+SS+ +F + S +++ P+ + S A P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 328 TKLYKSTRRWSLFQFMF 378
TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,371
Number of Sequences: 5004
Number of extensions: 36751
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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