Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0733.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 91 8e-19
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 77 1e-14
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 77 2e-14
07_01_1001 - 8460467-8460799 61 1e-09
07_03_0321 + 16757414-16757743 59 4e-09
01_06_0098 - 26416768-26416998 31 0.67
12_02_1217 + 27082452-27083593,27085041-27085158 29 2.7
11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877 29 3.5
12_01_0140 - 1088400-1088843 29 4.7
07_01_1160 - 10986404-10986760,10986853-10986987,10987074-10987997 29 4.7
08_02_1093 - 24271826-24273427 28 6.2
12_01_0090 + 717524-719080 28 8.2
11_04_0268 - 15561250-15561561,15561953-15562103,15562173-155624... 28 8.2
10_08_0104 + 14824122-14824178,14824274-14824318,14824419-148245... 28 8.2
10_01_0111 + 1384737-1386215 28 8.2
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 28 8.2
07_03_1188 + 24671022-24672482 28 8.2
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 91.1 bits (216), Expect = 8e-19
Identities = 40/67 (59%), Positives = 57/67 (85%)
Frame = +1
Query: 4 VAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLS 183
+AAYLLAVLGG T+P+A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGREK +
Sbjct: 4 IAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFA 63
Query: 184 SMPVGGG 204
S+P GGG
Sbjct: 64 SVPSGGG 70
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 77.0 bits (181), Expect = 1e-14
Identities = 32/68 (47%), Positives = 51/68 (75%)
Frame = +1
Query: 1 YVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKL 180
+++AYL+A L G ++P A D+ IL SVG E D K++ ++++++GKD+ +LIA GREK
Sbjct: 3 FISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKF 62
Query: 181 SSMPVGGG 204
+S+P GGG
Sbjct: 63 ASVPSGGG 70
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 76.6 bits (180), Expect = 2e-14
Identities = 33/68 (48%), Positives = 50/68 (73%)
Frame = +1
Query: 1 YVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKL 180
+++AYLLA L G P+A D+ IL SVG E D K++ ++++L GKD+ ++IA+GREK
Sbjct: 196 FISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKF 255
Query: 181 SSMPVGGG 204
+S+P GGG
Sbjct: 256 ASVPCGGG 263
>07_01_1001 - 8460467-8460799
Length = 110
Score = 60.9 bits (141), Expect = 1e-09
Identities = 28/66 (42%), Positives = 43/66 (65%)
Frame = +1
Query: 1 YVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKL 180
+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E L
Sbjct: 3 FVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEML 62
Query: 181 SSMPVG 198
+ VG
Sbjct: 63 AFGGVG 68
>07_03_0321 + 16757414-16757743
Length = 109
Score = 58.8 bits (136), Expect = 4e-09
Identities = 26/61 (42%), Positives = 41/61 (67%)
Frame = +1
Query: 1 YVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKL 180
+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E L
Sbjct: 3 FVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEML 62
Query: 181 S 183
+
Sbjct: 63 A 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 46 PAAADVEKILSSVGIEADGEKLKKVITELNGKD 144
P V KI+ +V IEAD + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 13 YLLAVLGGKTTPAAADVEKILSSVGIEADGEKL 111
Y+LA+ TPA +D E+ VG +ADG+ L
Sbjct: 27 YVLALSSSCNTPACSDEEEEDDEVGSDADGDDL 59
>11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877
Length = 258
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 37 KTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 162
KTT E +L+ + DG+K KKV+ L ++VE+L++
Sbjct: 137 KTTTEDDHEEVLLAYRSRKEDGKKRKKVVRRLGKEEVERLLS 178
>12_01_0140 - 1088400-1088843
Length = 147
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +1
Query: 37 KTTPAAADVEKILSSVGI--EADGEKLKKVITELNGKDVEQLIA 162
KTT D E++L + + DG+K KKV+ L ++VE+L++
Sbjct: 25 KTTTTEDDHEEVLLAYRPREKEDGKKRKKVVRRLGKEEVERLLS 68
>07_01_1160 - 10986404-10986760,10986853-10986987,10987074-10987997
Length = 471
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -2
Query: 691 PKYLPLTICHLAISGCATVGKXDRCGPLRLLRQLXKGGCAARRL 560
P+ LT+C +AIS A G RC L L L +G RRL
Sbjct: 180 PRLKQLTLCSVAISEDAIHGVLSRCPALESL--LLQGNFGVRRL 221
>08_02_1093 - 24271826-24273427
Length = 533
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 7 AAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGR 171
AA +AV G+TT AAA + SS G + ++ + L +D +A R
Sbjct: 8 AAAAVAVADGETTTAAARADSSSSSEGGSVCDDVVRNIFARLPARDAVASMALSR 62
>12_01_0090 + 717524-719080
Length = 518
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 200 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIF 66
PP + S P ++ S+S SS + + + S S+PT L F
Sbjct: 60 PPAVLSPSLVCPVIVAFSSSQAPSSALLLFNHASSCSLPTPLPTF 104
>11_04_0268 -
15561250-15561561,15561953-15562103,15562173-15562404,
15562878-15563091,15563240-15563367,15564347-15564524
Length = 404
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -3
Query: 420 SRPLRNTLAIMLLLKHKLE*RPAPRTFVKFSQR 322
SRP+ + + ++LL ++ LE +P TF+ ++R
Sbjct: 346 SRPMMSEVVVLLLTRNALEFQPTRPTFIDATRR 378
>10_08_0104 +
14824122-14824178,14824274-14824318,14824419-14824536,
14825522-14825581,14825783-14825891,14825972-14826197,
14826274-14826390,14826510-14826611
Length = 277
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 22 AVLGGKTTPAAADVEKILSSVGIEADGEKLK 114
A+L GK TP D+E+ L + G GE++K
Sbjct: 14 ALLRGKETPVILDLEESLRAKGDMTQGEEVK 44
>10_01_0111 + 1384737-1386215
Length = 492
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 537 PSHDVVKRRAVNCNTTHYRANWVPGPPXRSTVSISLISNSRPLR 406
PS D +RRA + +T + W+ P +S V ++L + PLR
Sbjct: 259 PSPDGGRRRAGSMSTDNSTMQWLDAQPAKSVVYVAL-GSEVPLR 301
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 104 SPSASIPTELRIFSTSAAAGVVLPPSTASKYAA 6
+P+ IPT F T A V +PP+TA AA
Sbjct: 533 APAPPIPTPSMPFPTVPAPPVTVPPATAPSMAA 565
>07_03_1188 + 24671022-24672482
Length = 486
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 670 ICHLAISGCATVGKXDRCGPLRLLRQLXKGG 578
IC L +SG A GK D LRL+ + +GG
Sbjct: 216 ICTLLVSGYANAGKLDHA--LRLIGETRRGG 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,621,081
Number of Sequences: 37544
Number of extensions: 296704
Number of successful extensions: 922
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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