Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0733.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    71   8e-13
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    70   1e-12
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    31   0.60 
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    31   0.60 
AF106584-6|AAC78220.1|  424|Caenorhabditis elegans Hypothetical ...    31   0.60 
Z81594-1|CAB04745.1|  908|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 70.9 bits (166), Expect = 8e-13
 Identities = 32/67 (47%), Positives = 45/67 (67%)
 Frame = +1

Query: 1   YVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKL 180
           Y+ AYLLA LGG  +P+A DV K+L + G++ D E    V+  L GK + ++IA G+ KL
Sbjct: 3   YLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKVKL 62

Query: 181 SSMPVGG 201
           SS+P GG
Sbjct: 63  SSVPSGG 69


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 35/66 (53%), Positives = 45/66 (68%)
 Frame = +1

Query: 1   YVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKL 180
           YV+AYLLAVLGG   P   D++ ILS+VG++AD E  K V++ L GK VE+LIA G   L
Sbjct: 3   YVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGL 62

Query: 181 SSMPVG 198
            S+  G
Sbjct: 63  VSVSGG 68


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 40  TTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQLI 159
           +TPA+A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 40  TTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQLI 159
           +TPA+A   +I  + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>AF106584-6|AAC78220.1|  424|Caenorhabditis elegans Hypothetical
           protein F54A5.1 protein.
          Length = 424

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -1

Query: 203 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLP 33
           P P       SRP+AI  +TS   S +    +  PS S P+ L +F+ +   GV LP
Sbjct: 340 PSPAVSTFEVSRPSAIISATSSTTSPISIPATIIPSVS-PSALELFAMAQQLGVQLP 395


>Z81594-1|CAB04745.1|  908|Caenorhabditis elegans Hypothetical
           protein T20F10.1 protein.
          Length = 908

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 531 HDVVKRRAVNCNTTHYRANWVPGPPX--RSTVSISLISNSRPLRN 403
           H VVK    N    ++  N  P PP   +ST+SI  +S  R   N
Sbjct: 247 HPVVKAPPPNPTMLNHNKNMAPPPPPPAKSTISIETMSEERKADN 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,953,172
Number of Sequences: 27780
Number of extensions: 217109
Number of successful extensions: 662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)